Evidence map›Paper›PMID 37149691›Full record

ArticleNature communications2023

Integrated genomic analysis reveals aberrations in WNT signaling in germ cell tumors of childhood and adolescence.

Lin Xu, Joshua L Pierce, Angelica Sanchez, Kenneth S Chen, Abhay A Shukla, Nicholas J Fustino, Sarai H Stuart, Aditya Bagrodia, Xue Xiao, Lei Guo and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 14 institutions in 4 countries.

Lin Xu *Quantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA. lin.xu@utsouthwestern.edu.ORCID 0000-0001-5815-4457
Joshua L Pierce *Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-2773-6793
Angelica Sanchez *Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Kenneth S ChenDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0003-2304-4631
Abhay A ShuklaDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Nicholas J FustinoDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Sarai H StuartDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0009-0006-3591-9107
Aditya BagrodiaDepartment of Urology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xue XiaoQuantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lei GuoQuantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Mark D KrailoDepartment of Preventative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, USA.
Furqan ShaikhThe Hospital for Sick Children, University of Toronto, Toronto, ON, Canada.
Deborah F BillmireRiley Hospital for Children, Indianapolis, IN, USA.
Farzana PashankarDepartment of Pediatrics, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0003-2883-0957
Jessica BestrashniyDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, USA.
J Wolter OosterhuisPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.ORCID 0000-0002-6685-686X
Ad J M GillisPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Yang XieQuantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lisa TeotDepartment of Pathology, Boston Children's Hospital, Boston, MA, USA.
Jaume MoraSant Joan de Déu Barcelona Children's Hospital, Barcelona, Spain.ORCID 0000-0002-9386-5980
Jenny N PoynterDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-8460-3938
Dinesh RakhejaDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-6888-7902
Leendert H J LooijengaPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.ORCID 0000-0002-8146-1911
Bruce W DraperDepartment of Molecular and Cellular Biology, University of California Davis, Davis, CA, USA.ORCID 0000-0002-4397-7749
A Lindsay FrazierDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0003-4748-8552
James F AmatrudaCancer and Blood Disease Institute, Children's Hospital Los Angeles, Los Angeles, CA, USA. jamatruda@chla.usc.edu.ORCID 0000-0002-9901-2137
The University of Texas Southwestern Medical Center · USPrincess Máxima Center · NLUniversity of Minnesota · USUniversity of Southern California · USBlank Children's Hospital · USBoston Children's Hospital · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USHospital Sant Joan de Déu Barcelona · ESRiley Hospital for Children · USSouthwestern Medical Center · USUniversity of California, Davis · USUniversity of California San Diego · USUniversity of Toronto · CAYale University · US

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
Translational Pediatric Cancer Epidemiology Research Training GrantT32CA099936 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Logan G. Spector · 2004 to 2026
$5.1M
Molecular Epidemiology of Pediatric Germ Cell TumorsR01CA151284 · NCI · UNIVERSITY OF MINNESOTA · PI POYNTER, JENNY N. · 2011 to 2015
$3.4M
Generation and Rapid Mapping of Low-Penetrance Disease Alleles in ZebrafishR01CA135731 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI AMATRUDA, JAMES F · 2008 to 2012
$1.6M
The role of PLAG1 in Wilms tumor formationK08CA207849 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHEN, KENNETH SUNG-MAN · 2017 to 2021
$781k
NCATS NIH HHS UL1 TR001863NCI NIH HHS K08 CA207849NCI NIH HHS R01 CA135731NCI NIH HHS R01 CA151284NCI NIH HHS T32 CA099936NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766
6 · The paper itself

Abstract

Germ cell tumors (GCTs) are neoplasms of the testis, ovary and extragonadal sites that occur in infants, children, adolescents and adults. Post-pubertal (type II) malignant GCTs may present as seminoma, non-seminoma or mixed histologies. In contrast, pre-pubertal (type I) GCTs are limited to (benign) teratoma and (malignant) yolk sac tumor (YST). Epidemiologic and molecular data have shown that pre- and post-pubertal GCTs arise by distinct mechanisms. Dedicated studies of the genomic landscape of type I and II GCT in children and adolescents are lacking. Here we present an integrated genomic analysis of extracranial GCTs across the age spectrum from 0-24 years. Activation of the WNT pathway by somatic mutation, copy-number alteration, and differential promoter methylation is a prominent feature of GCTs in children, adolescents and young adults, and is associated with poor clinical outcomes. Significantly, we find that small molecule WNT inhibitors can suppress GCT cells both in vitro and in vivo. These results highlight the importance of WNT pathway signaling in GCTs across all ages and provide a foundation for future efforts to develop targeted therapies for these cancers.

Indexed as

Neoplasms, Germ Cell and EmbryonalTeratomaTesticular NeoplasmsAdolescentAdultChildChild, PreschoolFemaleGenomicsHumansInfantInfant, NewbornMaleWnt Signaling PathwayYoung Adult

Identifiers

PMID37149691
PMCPMC10164134
OpenAlexW4372338121

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.