Evidence map›Paper›PMID 37149574›Full record

ArticleBMC plant biology2023

Integrative analysis of metabolome and transcriptome profiles to highlight aroma determinants in Aglianico and Falanghina grape berries.

Clizia Villano, Olivia Costantina Demurtas, Salvatore Esposito, Antonio Granell, José Luis Rambla, Paola Piombino, Luigi Frusciante, Domenico Carputo, Gianfranco Diretto, Riccardo Aversano

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
9.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Clizia Villano *Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, Naples, 80055, Italy.
Olivia Costantina Demurtas *Biotechnology Laboratory, Casaccia Research Centre, Italian National Agency for New Technologies, Energy, and Sustainable Development (ENEA), Rome, 00123, Italy.
Salvatore EspositoCREA Research Centre for Cereal and Industrial Crops (CREA-CI), S.S. 673, km 25, Foggia, 200-71122, Italy.
Antonio GranellIBMCP Institute for Plant Molecular and Cell Biology (CSIC-UPV), Carrer de l'Enginyer Fausto Elio, s/n, Valencia, 46022, Spain.
José Luis RamblaIBMCP Institute for Plant Molecular and Cell Biology (CSIC-UPV), Carrer de l'Enginyer Fausto Elio, s/n, Valencia, 46022, Spain.
Paola PiombinoDepartment of Agricultural Sciences, University of Naples Federico II, Via Università 100, Naples, 80055, Italy.
Luigi FruscianteDepartment of Agricultural Sciences, University of Naples Federico II, Via Università 100, Naples, 80055, Italy.
Domenico CarputoDepartment of Agricultural Sciences, University of Naples Federico II, Via Università 100, Naples, 80055, Italy.
Gianfranco DirettoBiotechnology Laboratory, Casaccia Research Centre, Italian National Agency for New Technologies, Energy, and Sustainable Development (ENEA), Rome, 00123, Italy. gianfranco.diretto@enea.it.
Riccardo AversanoDepartment of Agricultural Sciences, University of Naples Federico II, Via Università 100, Naples, 80055, Italy. raversan@unina.it.
University of Naples Federico II · ITInstituto de Biología Molecular y Celular de Plantas · ESNational Agency for New Technologies, Energy and Sustainable Economic Development · ITCereal Research Centre · IT

Funding

Italian Ministry of University and Research H34I19000590001Ministero dell'Istruzione, dell'Università e della Ricerca IJC2020-045612-IROXY Cost Action CA18210
6 · The paper itself

Abstract

backgroundThe biochemical makeup of grape berries at harvest is essential for wine quality and depends on a fine transcriptional regulation occurring during berry development. In this study, we conducted a comprehensive survey of transcriptomic and metabolomic changes occurring in different berry tissues and developmental stages of the ancient grapes Aglianico and Falanghina to establish the patterns of the secondary metabolites contributing to their wine aroma and investigate the underlying transcriptional regulation.

resultsOver two hundred genes related to aroma were found, of which 107 were differentially expressed in Aglianico and 99 in Falanghina. Similarly, 68 volatiles and 34 precursors were profiled in the same samples. Our results showed a large extent of transcriptomic and metabolomic changes at the level of isoprenoids (terpenes, norisoprenoids), green leaf volatiles (GLVs), and amino acid pathways, although the terpenoid metabolism was the most distinctive for Aglianico, and GLVs for Falanghina. Co-expression analysis that integrated metabolome and transcriptome data pinpointed 25 hub genes as points of biological interest in defining the metabolic patterns observed. Among them, three hub genes encoding for terpenes synthases (VvTPS26, VvTPS54, VvTPS68) in Aglianico and one for a GDP-L-galactose phosphorylase (VvGFP) in Falanghina were selected as potential active player underlying the aroma typicity of the two grapes.

conclusionOur data improve the understanding of the regulation of aroma-related biosynthetic pathways of Aglianico and Falanghina and provide valuable metabolomic and transcriptomic resources for future studies in these varieties.

Indexed as

TranscriptomeVitisFruitMetabolomeOdorantsTerpenesTerpenesAmino acidsGreen leaf volatilesNorisoprenoidsRNASeqTerpenoidsWGCNA

Identifiers

PMID37149574
PMCPMC10163809
OpenAlexW4375855743

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.