Evidence map›Paper›PMID 37149536›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Visualization of Carbohydrate Uptake Using Fluorescent Polysaccharides.

Greta Reintjes, Leeann Klassen, D Wade Abbott

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Greta ReintjesMax Planck Institute for Marine Microbiology, Department of Molecular Ecology, Bremen, Germany. greta.reintjes@mpi-bremen.de.
Leeann KlassenAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, AB, Canada.
D Wade AbbottAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, AB, Canada.
Agriculture and Agri-Food Canada · CAMax Planck Institute for Marine Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescently labeled polysaccharides enable the visualization of carbohydrate-bacterial interactions and the quantification of carbohydrate hydrolysis rates in cultures and complex communities. Here, we present the method of generating polysaccharides conjugated to the fluorescent molecule, fluoresceinamine. Further, we describe the protocol of incubating these probes in bacterial cultures and complex environmental microbial communities, visualizing bacterial-probe interactions using fluorescence microscopy, and quantifying these interactions using flow cytometry. Finally, we present a novel approach for the in situ metabolic phenotyping of bacterial cells using fluorescently activated cell sorting coupled with omics-based analysis.

Indexed as

CarbohydratesPolysaccharidesFlow CytometryFluorescent DyesMicroscopy, FluorescenceCarbohydratesFluorescent DyesPolysaccharidesCarbohydrate utilizationEpifluorescence microscopyFlow cytometryFluorescent polysaccharidesGlycanHeterotrophy

Identifiers

PMID37149536
OpenAlexW4375824620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.