Evidence map›Paper›PMID 37148321›Full record

ArticlePlant cell reports2023

Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.

Jiajun Liu, Wanrong Jie, Xi'an Shi, Yanfeng Ding, Chengqiang Ding

Abstract read
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Article in Plant cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Jiajun LiuCollege of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Wanrong JieCollege of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Xi'an ShiCollege of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Yanfeng DingCollege of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Chengqiang DingCollege of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. dingcq@njau.edu.cn.ORCID http://orcid.org/0000-0001-6061-1979
Nanjing Agricultural University · CN

Funding

National Natural Science Foundation of China 31971842
6 · The paper itself

Abstract

key messageThe transcription elongation factor SPT4/SPT5 complex is essential for rice vegetative and reproductive growth and that OsSPT5-1, with its interactor APO2, is involved in multiple phytohormone pathways. The SPT4/SPT5 complex is a transcription elongation factor that regulates the processivity of transcription elongation. However, our understanding of the role of SPT4/SPT5 complex in developmental regulation remains limited. Here, we identified three SPT4/SPT5 genes (OsSPT4, OsSPT5-1, and OsSPT5-2) in rice, and investigated their roles in vegetative and reproductive growth. These genes are highly conserved with their orthologs in other species. OsSPT4 and OsSPT5-1 are widely expressed in various tissues. By contrast, OsSPT5-2 is expressed at a relatively low level, which could cause osspt5-2 null mutants have no phenotypes. Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects. An incomplete mutant line (osspt5-1#12) displayed gibberellin-related dwarfed defects and a weak root system at an early vegetative phase, and a short life cycle in different planting environments. Furthermore, OsSPT5-1 interacts with the transcription factor ABERRANT PANICLE ORGANIZATION 2 (APO2) and plays a similar role in regulating the growth of rice shoots. RNA sequencing analysis verified that OsSPT5-1 is involved in multiple phytohormone pathways, including gibberellin, auxin, and cytokinin. Therefore, the SPT4/SPT5 complex is essential for both vegetative and reproductive growth in rice.

Indexed as

OryzaSaccharomyces cerevisiae ProteinsChromosomal Proteins, Non-HistoneGibberellinsGrowth and DevelopmentPeptide Elongation FactorsPlant Growth RegulatorsTranscription FactorsTranscription, GeneticChromosomal Proteins, Non-HistoneGibberellinsPeptide Elongation FactorsPlant Growth RegulatorsSaccharomyces cerevisiae ProteinsTranscription FactorsAPO2OsSPT4OsSPT5PhytohormoneRice (Oryza sativa L.)Transcription elongation factor

Identifiers

PMID37148321
OpenAlexW4372355450

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.