Evidence map›Paper›PMID 37147358›Full record

ArticleNature communications2023

Hybrids of RNA viruses and viroid-like elements replicate in fungi.

Marco Forgia, Beatriz Navarro, Stefania Daghino, Amelia Cervera, Andreas Gisel, Silvia Perotto, Dilzara N Aghayeva, Mary F Akinyuwa, Emanuela Gobbi, Ivan N Zheludev and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
22.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Discovery of Viroids and Viroid-Like RNAs in Plants.Plant biotechnology journal · 2026
    Article
  7. Article
  8. Review
  9. The Viruses ofViruses · 2025
    Article
  10. Article
  11. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 7 countries.

Marco Forgia *Institute for Sustainable Plant Protection, National Research Council of Italy, Torino, Italy.ORCID 0000-0003-0101-1046
Beatriz Navarro *Institute for Sustainable Plant Protection, National Research Council of Italy, Bari, Italy.
Stefania DaghinoInstitute for Sustainable Plant Protection, National Research Council of Italy, Torino, Italy.
Amelia CerveraInstituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-CSIC, Valencia, Spain.ORCID 0000-0001-6025-8773
Andreas GiselInstitute of Biomedical Technologies, National Research Council of Italy, Bari, Italy.ORCID 0000-0001-7218-9488
Silvia PerottoDepartment of Life Science and Systems Biology, University of Torino, Torino, Italy.ORCID 0000-0003-0121-1806
Dilzara N AghayevaInstitute of Botany, Ministry of Science and Education of the Republic of Azerbaijan, Baku, Azerbaijan.
Mary F AkinyuwaDepartment of Agroforestry Ecosystems, Universidad Politécnica de Valencia, Valencia, Spain.
Emanuela GobbiDepartment of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.ORCID 0000-0001-7565-5966
Ivan N ZheludevDepartment of Biochemistry, Stanford University, Stanford, CA, USA.ORCID 0000-0002-9572-0574
Robert C EdgarIndependent Researcher, Corte Madera, CA, USA.ORCID 0000-0001-7355-2541
Rayan ChikhiG5 Sequence Bioinformatics, Department of Computational Biology, Institut Pasteur, Paris, France.
Massimo TurinaInstitute for Sustainable Plant Protection, National Research Council of Italy, Brescia, Italy. massimo.turina@ipsp.cnr.it.ORCID 0000-0002-9659-9470
Artem BabaianDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada. a.babaian@utoronto.ca.ORCID 0000-0002-4315-6262
Francesco Di SerioInstitute for Sustainable Plant Protection, National Research Council of Italy, Bari, Italy. francesco.diserio@ipsp.cnr.it.ORCID 0000-0003-2822-704X
Marcos de la PeñaInstituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-CSIC, Valencia, Spain. rivero@ibmcp.upv.es.ORCID 0000-0002-7949-8459
Institute for Sustainable Plant Protection · ITInstituto de Biología Molecular y Celular de Plantas · ESInstitute of Botany · AZInstitut Pasteur · FRInternational Institute of Tropical Agriculture · NGStanford University · USUniversity of Brescia · ITUniversity of Padua · ITUniversity of Toronto · CAUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Earth's life may have originated as self-replicating RNA, and it has been argued that RNA viruses and viroid-like elements are remnants of such pre-cellular RNA world. RNA viruses are defined by linear RNA genomes encoding an RNA-dependent RNA polymerase (RdRp), whereas viroid-like elements consist of small, single-stranded, circular RNA genomes that, in some cases, encode paired self-cleaving ribozymes. Here we show that the number of candidate viroid-like elements occurring in geographically and ecologically diverse niches is much higher than previously thought. We report that, amongst these circular genomes, fungal ambiviruses are viroid-like elements that undergo rolling circle replication and encode their own viral RdRp. Thus, ambiviruses are distinct infectious RNAs showing hybrid features of viroid-like RNAs and viruses. We also detected similar circular RNAs, containing active ribozymes and encoding RdRps, related to mitochondrial-like fungal viruses, highlighting fungi as an evolutionary hub for RNA viruses and viroid-like elements. Our findings point to a deep co-evolutionary history between RNA viruses and subviral elements and offer new perspectives in the origin and evolution of primordial infectious agents, and RNA life.

Indexed as

RNA, CatalyticRNA VirusesViroidsFungiRNARNA-Dependent RNA PolymeraseRNA, ViralVirus ReplicationRNARNA, CatalyticRNA-Dependent RNA PolymeraseRNA, Viral

Identifiers

PMID37147358
PMCPMC10162972
OpenAlexW4372331783

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.