Evidence map›Paper›PMID 37147298›Full record

ArticleNature communications2023

Circulating tumor DNA reveals mechanisms of lorlatinib resistance in patients with relapsed/refractory ALK-driven neuroblastoma.

Esther R Berko, Gabriela M Witek, Smita Matkar, Zaritza O Petrova, Megan A Wu, Courtney M Smith, Alex Daniels, Joshua Kalna, Annie Kennedy, Ivan Gostuski and 12 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03107988 (Phase 1 Study of Lorlatinib), which is not on this map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03107988 phase1completednot on this map

Phase 1 Study of Lorlatinib (PF-06463922), an Oral Small Molecule Inhibitor of ALK/ROS1, for Patients With ALK-Driven Relapsed or Refractory Neuroblastoma

TypeinterventionalSponsorNew Approaches to Neuroblastoma Therapy ConsortiumRan2017 to 2025Enrolled65ConditionsNeuroblastomaArmsLorlatinib, Cyclophosphamide, Topotecan, Filgrastim/pegfilgrastim
3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Epigenetic Liquid Biopsy Enables Universal Mutation-Agnostic Molecular Surveillance for High-Risk Neuroblastoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 2 countries.

Esther R Berko *Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Gabriela M Witek *Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-2635-773X
Smita Matkar *Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Zaritza O Petrova *Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA.
Megan A WuDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT, USA.
Courtney M SmithDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT, USA.
Alex DanielsDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Joshua KalnaDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Annie KennedyDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ivan GostuskiDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA.
Colleen CaseyDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0009-0004-9259-1035
Kateryna KrytskaDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Mark GerelusDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0001-8986-4523
Dean PavlickFoundation Medicine, Inc, Cambridge, MA, USA.
Susan GhazarianCancer and Blood Disease Institute, Children's Hospital Los Angeles, Los Angeles, CA, USA.
Julie R ParkSt. Jude Children's Research Hospital, Memphis, TN, USA.
Araz MarachelianCancer and Blood Disease Institute, Children's Hospital Los Angeles, Los Angeles, CA, USA.
John M MarisDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-8088-7929
Kelly C GoldsmithAflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, GA, USA.
Ravi RadhakrishnanDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-0686-2851
Mark A LemmonDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT, USA. mark.lemmon@yale.edu.ORCID 0000-0002-3379-5319
Yaël P MosséDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA. mosse@chop.edu.ORCID 0000-0002-3463-0399
Children's Hospital of Philadelphia · USYale Cancer Center · USUniversity of Pennsylvania · USUniversity of Southern California · USFoundation Medicine (United States)Seattle Children's Hospital · USSt. Jude Children's Research Hospital · US

Funding

Tumor microenvironment-dependent therapy resistanceP01CA217959 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI JOHN M MARIS · 2017 to 2026
$20.7M
CANCER RESEARCH TRAINING PROGRAMT32CA009615 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Gregory L Beatty, MICHAEL D HOGARTY · 1988 to 2026
$10.4M
NRSA Training CoreTL1TR001880 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$10.0M
Discovering mechanisms of neuroblastoma tumorigenesis to improve patient outcomesR35CA220500 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI JOHN M MARIS · 2017 to 2026
$8.7M
Understanding Signaling by Non-Canonical Receptor Tyrosine KinasesR35GM122485 · NIGMS · YALE UNIVERSITY · PI Mark A Lemmon · 2017 to 2026
$7.9M
Targeting Oncogenic ALK Signaling in NeuroblastomaR01CA140198 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI MOSSE, YAEL P · 2009 to 2023
$5.6M
A physical sciences approach to investigate the role of exosomes in metastatic progressionU01CA250044 · NCI · UNIVERSITY OF PENNSYLVANIA · PI GUO, WEI, RADHAKRISHNAN, RAVI · 2021 to 2025
$3.9M
A plasticity and reprogramming paradigm for therapy resistance at the single cell levelU01CA227550 · NCI · UNIVERSITY OF PENNSYLVANIA · PI RADHAKRISHNAN, RAVI, RAJ, ARJUN · 2018 to 2022
$3.3M
Doris Duke Charitable Foundation 2019120NCATS NIH HHS TL1 TR001880NCI NIH HHS P01 CA217959NCI NIH HHS R01 CA140198NCI NIH HHS R35 CA220500NCI NIH HHS T32 CA009615NCI NIH HHS U01 CA227550NCI NIH HHS U01 CA250044NIGMS NIH HHS R35 GM122485
6 · The paper itself

Abstract

Activating point mutations in Anaplastic Lymphoma Kinase (ALK) have positioned ALK as the only mutated oncogene tractable for targeted therapy in neuroblastoma. Cells with these mutations respond to lorlatinib in pre-clinical studies, providing the rationale for a first-in-child Phase 1 trial (NCT03107988) in patients with ALK-driven neuroblastoma. To track evolutionary dynamics and heterogeneity of tumors, and to detect early emergence of lorlatinib resistance, we collected serial circulating tumor DNA samples from patients enrolled on this trial. Here we report the discovery of off-target resistance mutations in 11 patients (27%), predominantly in the RAS-MAPK pathway. We also identify newly acquired secondary compound ALK mutations in 6 (15%) patients, all acquired at disease progression. Functional cellular and biochemical assays and computational studies elucidate lorlatinib resistance mechanisms. Our results establish the clinical utility of serial circulating tumor DNA sampling to track response and progression and to discover acquired resistance mechanisms that can be leveraged to develop therapeutic strategies to overcome lorlatinib resistance.

Indexed as

Carcinoma, Non-Small-Cell LungCirculating Tumor DNALung NeoplasmsNeuroblastomaAminopyridinesAnaplastic Lymphoma KinaseDrug Resistance, NeoplasmHumansLactamsLactams, MacrocyclicMutationProtein Kinase InhibitorsPyrazolesAminopyridinesAnaplastic Lymphoma KinaseCirculating Tumor DNALactamsLactams, MacrocycliclorlatinibProtein Kinase InhibitorsPyrazoles

Identifiers

PMID37147298
PMCPMC10163008
OpenAlexW4372294503

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.