Evidence map›Paper›PMID 37146074›Full record

ArticlePLoS genetics2023

XRN2 suppresses aberrant entry of tRNA trailers into argonaute in humans and Arabidopsis.

Briana Wilson, Zhangli Su, Pankaj Kumar, Anindya Dutta

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. AbioRxiv : the preprint server for biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Briana WilsonDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, United States of America.
Zhangli SuDepartment of Genetics, University of Alabama, Birmingham, Alabama, United States of America.ORCID 0000-0001-6495-3351
Pankaj KumarDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, United States of America.
Anindya DuttaDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, United States of America.ORCID 0000-0002-4319-0073
University of Alabama at Birmingham · USUniversity of Virginia · US

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Dina Gould Halme · 1987 to 2026
$72.1M
The role of MCM8-9 in genomic instability of cancersR01CA060499 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Anindya Dutta · 1994 to 2026
$8.6M
Involvement of Noncanonical Short RNAs in Gene Repression through the RNA-Induced-Silencing ComplexR01GM146756 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DUTTA, ANINDYA · 2022 to 2025
$1.3M
The role of small RNA modifications in gliomaR00CA259526 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SU, ZHANGLI · 2023 to 2025
$708k
The role of small RNA modifications in gliomaK99CA259526 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SU, ZHANGLI · 2022 to 2023
$221k
Stability of a novel family of short noncoding RNAs, tRFs: Effect on oncogenesisF30CA254134 · NCI · UNIVERSITY OF VIRGINIA · PI WILSON, BRIANA · 2020 to 2022
$120k
NCI NIH HHS F30 CA254134NCI NIH HHS K99 CA259526NCI NIH HHS P30 CA044579NCI NIH HHS R00 CA259526NCI NIH HHS R01 CA060499NIGMS NIH HHS R01 GM146756
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are a well-characterized class of small RNAs (sRNAs) that regulate gene expression post-transcriptionally. miRNAs function within a complex milieu of other sRNAs of similar size and abundance, with the best characterized being tRNA fragments or tRFs. The mechanism by which the RNA-induced silencing complex (RISC) selects for specific sRNAs over others is not entirely understood in human cells. Several highly expressed tRNA trailers (tRF-1s) are strikingly similar to microRNAs in length but are generally excluded from the microRNA effector pathway. This exclusion provides a paradigm for identifying mechanisms of RISC selectivity. Here, we show that 5' to 3' exoribonuclease XRN2 contributes to human RISC selectivity. Although highly abundant, tRF-1s are highly unstable and degraded by XRN2 which blocks tRF-1 accumulation in RISC. We also find that XRN mediated degradation of tRF-1s and subsequent exclusion from RISC is conserved in plants. Our findings reveal a conserved mechanism that prevents aberrant entry of a class of highly produced sRNAs into Ago2.

Indexed as

ArabidopsisArabidopsis ProteinsMicroRNAsArgonaute ProteinsExoribonucleasesHumansNuclear ProteinsRNA-Induced Silencing ComplexRNA, TransferArabidopsis ProteinsArgonaute ProteinsExoribonucleasesMicroRNAsNuclear ProteinsRNA-Induced Silencing ComplexRNA, TransferXRN2 protein, ArabidopsisXRN2 protein, human

Identifiers

PMID37146074
PMCPMC10191329
OpenAlexW4372333576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.