Evidence map›Paper›PMID 37145997›Full record

ArticlePloS one2023

Identification of stably expressed Internal Control Genes (ICGs) for normalization of expression data in liver of C57BL/6 mice injected with beta casomorphins.

Anurag Kumar, Monika Sodhi, Manishi Mukesh, Amandeep Kaur, Gaurav Bhakri, Vipul Chaudhary, Preeti Swami, Vishal Sharma, Ashok Kumar Mohanty, Ranjit S Kataria

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Anurag KumarAnimal Biotechnology Centre, National Dairy Research Institute, Karnal, Haryana, India.
Monika SodhiAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.ORCID 0000-0003-1356-3999
Manishi MukeshAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Amandeep KaurAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Gaurav BhakriAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Vipul ChaudharyAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Preeti SwamiAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Vishal SharmaAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Ashok Kumar MohantyAnimal Biotechnology Centre, National Dairy Research Institute, Karnal, Haryana, India.
Ranjit S KatariaAnimal Biotechnology Division, National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
National Bureau of Animal Genetic Resources · INNational Dairy Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, beta-casomorphin peptides (BCM7/BCM9) derived from the digestion of cow milk have drawn a lot of attention world over because of their proposed impact on human health. In order to evaluate the transcriptional modulation of target genes through RT-qPCR in response to these peptides, availability of appropriate reference or internal control genes (ICGs) will be the key. The present study was planned to identify a panel of stable ICGs in the liver tissue of C57BL/6 mice injected with BCM7/BCM9 cow milk peptides for 3 weeks. A total of ten candidate genes were evaluated as potential ICGs by assessing their expression stability using software suites; geNorm, NormFinder and BestKeeper. The suitability of the identified ICGs was validated by assessing the relative expression levels of target genes, HP and Cu/Zn SOD. Based on geNorm, PPIA and SDHA gene pair was identified to be most stably expressed in liver tissue during the animal trials. Similarly, NormFinder analysis also identified PPIA as the most stable gene. BestKeeper analysis showed crossing point SD value for all the genes in the acceptable range that is closer to 1. Overall, the study identified a panel of stable ICGs for reliable normalization of target genes expression data in mice liver tissues during BCM7/9 peptides trial.

Indexed as

Gene Expression ProfilingLiverAnimalsCattleEndorphinsFemaleGene ExpressionHumansMiceMice, Inbred C57BLReal-Time Polymerase Chain ReactionReference Standardsbeta-casomorphinsEndorphins

Identifiers

PMID37145997
PMCPMC10162558
OpenAlexW4372334161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.