Evidence map›Paper›PMID 37144857›Full record

ArticleThe Plant cell2023

AGAMOUS regulates various target genes via cell cycle-coupled H3K27me3 dilution in floral meristems and stamens.

Margaret Anne Pelayo, Fumi Morishita, Haruka Sawada, Kasumi Matsushita, Hideaki Iimura, Zemiao He, Liang Sheng Looi, Naoya Katagiri, Asumi Nagamori, Takamasa Suzuki and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
10.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Margaret Anne PelayoDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0003-3750-0167
Fumi MorishitaDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0004-3205-5484
Haruka SawadaDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0008-0740-2201
Kasumi MatsushitaDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0001-3716-0548
Hideaki IimuraDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0007-0303-4459
Zemiao HeTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.ORCID 0009-0000-7817-5263
Liang Sheng LooiDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0003-0751-3936
Naoya KatagiriDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0007-7667-748X
Asumi NagamoriDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0005-9663-5469
Takamasa SuzukiDepartment of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, Kasugai 487-8501, Japan.ORCID 0000-0002-1977-0510
Marek ŠirlDepartment of Experimental Plant Biology, Faculty of Science, Charles University, Prague 12844, Czech Republic.ORCID 0009-0006-8226-2451
Aleš SoukupDepartment of Experimental Plant Biology, Faculty of Science, Charles University, Prague 12844, Czech Republic.ORCID 0000-0001-8741-2507
Akiko SatakeDepartment of Biology, Faculty of Science, Kyushu University, Nishi-ku 819-0395, Japan.ORCID 0000-0002-0831-8617
Toshiro ItoDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0002-8206-2787
Nobutoshi YamaguchiDivision of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0003-3738-6157
Nara Institute of Science and Technology · JPTemasek Life Sciences Laboratory · SGCharles University · CZChubu University · JPKyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The MADS domain transcription factor AGAMOUS (AG) regulates floral meristem termination by preventing maintenance of the histone modification lysine 27 of histone H3 (H3K27me3) along the KNUCKLES (KNU) coding sequence. At 2 d after AG binding, cell division has diluted the repressive mark H3K27me3, allowing activation of KNU transcription prior to floral meristem termination. However, how many other downstream genes are temporally regulated by this intrinsic epigenetic timer and what their functions are remain unknown. Here, we identify direct AG targets regulated through cell cycle-coupled H3K27me3 dilution in Arabidopsis thaliana. Expression of the targets KNU, AT HOOK MOTIF NUCLEAR LOCALIZED PROTEIN18 (AHL18), and PLATZ10 occurred later in plants with longer H3K27me3-marked regions. We established a mathematical model to predict timing of gene expression and manipulated temporal gene expression using the H3K27me3-marked del region from the KNU coding sequence. Increasing the number of del copies delayed and reduced KNU expression in a polycomb repressive complex 2- and cell cycle-dependent manner. Furthermore, AHL18 was specifically expressed in stamens and caused developmental defects when misexpressed. Finally, AHL18 bound to genes important for stamen growth. Our results suggest that AG controls the timing of expression of various target genes via cell cycle-coupled dilution of H3K27me3 for proper floral meristem termination and stamen development.

Indexed as

ArabidopsisArabidopsis ProteinsAGAMOUS Protein, ArabidopsisCell DivisionFlowersGene Expression Regulation, PlantHistonesMeristemAGAMOUS Protein, ArabidopsisArabidopsis ProteinsHistones

Identifiers

PMID37144857
PMCPMC10396370
OpenAlexW4372295368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.