Evidence map›Paper›PMID 37144817›Full record

ArticleIUCrJ2023

Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering.

Kara A Zielinski, Andrea M Katz, George D Calvey, Suzette A Pabit, Shawn K Milano, Cody Aplin, Josue San Emeterio, Richard A Cerione, Lois Pollack

Abstract read
In one paragraph

Article in IUCrJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kara A ZielinskiSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.ORCID 0000-0002-9907-5058
Andrea M KatzSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.
George D CalveySchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.
Suzette A PabitSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.
Shawn K MilanoDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York USA.
Cody AplinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York USA.ORCID 0000-0002-0211-8016
Josue San EmeterioSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.
Richard A CerioneDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York USA.ORCID 0000-0003-4512-5897
Lois PollackSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York USA.

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Cell Biological mechanisms of centromere driveR35GM122475 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Michael Lampson · 2017 to 2026
$4.5M
The unique roles of the GTP-binding/protein crosslinking enzyme transglutaminase-2 and signaling partners in aggressive cancersR01CA201402 · NCI · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2016 to 2024
$4.3M
Nucleic acid interactions with partners: ions and proteinsR35GM122514 · NIGMS · CORNELL UNIVERSITY · PI Lois Pollack · 2017 to 2026
$3.8M
New frontiers in extracellular signalingR35GM122575 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2017 to 2021
$3.0M
Targeting the dependency of cancer cells on the sirtuin SIRT5R01CA223534 · NCI · CORNELL UNIVERSITY · PI CERIONE, RICHARD A., LIN, HENING · 2019 to 2023
$2.3M
Lab Source for Small/Wide Angle X-ray Scattering ExperimentsS10OD028617 · OD · CORNELL UNIVERSITY · PI POLLACK, LOIS · 2020 to 2020
$549k
VINYLLITHIUM THROUGH FUNCTIONALIZED VINYLTIN REAGENTF32GM012254 · NIGMS · COLORADO STATE UNIVERSITY-FORT COLLINS · PI DEL VALLE POMALES, LUIS E · 1987 to 1989
–
NCI NIH HHS R01 CA201402NCI NIH HHS R01 CA223534NIGMS NIH HHS CA201402NIGMS NIH HHS CA233534NIGMS NIH HHS P30 GM124166NIGMS NIH HHS R35-GM122175NIGMS NIH HHS R35 GM122475NIGMS NIH HHS R35 GM122514NIGMS NIH HHS R35-GM12254NIGMS NIH HHS R35 GM122575NIGMS NIH HHS S10OD028617NIGMS NIH HHS T32 GM008267NIGMS NIH HHS T32-GM008267NIH HHS S10 OD028617
6 · The paper itself

Abstract

Advances in time-resolved structural techniques, mainly in macromolecular crystallography and small-angle X-ray scattering (SAXS), allow for a detailed view of the dynamics of biological macromolecules and reactions between binding partners. Of particular promise, are mix-and-inject techniques, which offer a wide range of experimental possibility as microfluidic mixers are used to rapidly combine two species just prior to data collection. Most mix-and-inject approaches rely on diffusive mixers, which have been effectively used within crystallography and SAXS for a variety of systems, but their success is dependent on a specific set of conditions to facilitate fast diffusion for mixing. The use of a new chaotic advection mixer designed for microfluidic applications helps to further broaden the types of systems compatible with time-resolved mixing experiments. The chaotic advection mixer can create ultra-thin, alternating layers of liquid, enabling faster diffusion so that even more slowly diffusing molecules, like proteins or nucleic acids, can achieve fast mixing on timescales relevant to biological reactions. This mixer was first used in UV-vis absorbance and SAXS experiments with systems of a variety of molecular weights, and thus diffusion speeds. Careful effort was also dedicated to making a loop-loading sample-delivery system that consumes as little sample as possible, enabling the study of precious, laboratory-purified samples. The combination of the versatile mixer with low sample consumption opens the door to many new applications for mix-and-inject studies.

Indexed as

MicrofluidicsProteinsScattering, Small AngleX-Ray DiffractionX-RaysProteinsbiomacromolecular systemsmix-and-inject techniquesstructural biologytime-resolved SAXS

Identifiers

PMID37144817
PMCPMC10161774

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.