Evidence map›Paper›PMID 37144462›Full record

ArticleNucleic acids research2023

Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins.

Laura A Lindsey-Boltz, Yanyan Yang, Cansu Kose, Nazli Deger, Khagani Eynullazada, Hiroaki Kawara, Aziz Sancar

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Plant tolerance mechanisms to DNA-damaging UV stress.Journal of experimental botany · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Laura A Lindsey-BoltzDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.ORCID 0000-0001-6493-8194
Yanyan YangDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.ORCID 0000-0001-9943-4279
Cansu KoseDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.ORCID 0000-0002-2024-3566
Nazli DegerDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Khagani EynullazadaDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Hiroaki KawaraDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Aziz SancarDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.ORCID 0000-0001-6469-4900
University of North Carolina at Chapel Hill · US

Funding

UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
Molecular Mechanism of Mammalian DNA Excision Repair, DNA Damage Checkpoints and the Circadian ClockR35GM118102 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AZIZ SANCAR · 2016 to 2026
$10.6M
DNA Adduct Detection and Repair in Mammalian CellsR01ES033414 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SANCAR, AZIZ · 2021 to 2025
$2.8M
NIEHS NIH HHS P30 ES010126NIEHS NIH HHS R01 ES033414NIGMS NIH HHS R35 GM118102
6 · The paper itself

Abstract

Nucleotide excision repair removes UV-induced DNA damage through two distinct sub-pathways, global repair and transcription-coupled repair (TCR). Numerous studies have shown that in human and other mammalian cell lines that the XPC protein is required for repair of DNA damage from nontranscribed DNA via global repair and the CSB protein is required for repair of lesions from transcribed DNA via TCR. Therefore, it is generally assumed that abrogating both sub-pathways with an XPC-/-/CSB-/- double mutant would eliminate all nucleotide excision repair. Here we describe the construction of three different XPC-/-/CSB-/- human cell lines that, contrary to expectations, perform TCR. The XPC and CSB genes were mutated in cell lines derived from Xeroderma Pigmentosum patients as well as from normal human fibroblasts and repair was analyzed at the whole genome level using the very sensitive XR-seq method. As predicted, XPC-/- cells exhibited only TCR and CSB-/- cells exhibited only global repair. However, the XPC-/-/CSB-/- double mutant cell lines, although having greatly reduced repair, exhibited TCR. Mutating the CSA gene to generate a triple mutant XPC-/-/CSB-/-/CSA-/- cell line eliminated all residual TCR activity. Together, these findings provide new insights into the mechanistic features of mammalian nucleotide excision repair.

Indexed as

DNA RepairXeroderma PigmentosumAnimalsCell LineDNA-Binding ProteinsDNA DamageHumansMammalsReceptors, Antigen, T-CellUltraviolet RaysDNA-Binding ProteinsReceptors, Antigen, T-CellXPC protein, human

Identifiers

PMID37144462
PMCPMC10325923
OpenAlexW4372295604

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.