Evidence map›Paper›PMID 37143991›Full record

ArticleEcology and evolution2023

Application of a deep learning image classifier for identification of Amazonian fishes.

Alexander J Robillard, Michael G Trizna, Morgan Ruiz-Tafur, Edgard Leonardo Dávila Panduro, C David de Santana, Alexander E White, Rebecca B Dikow, Jessica L Deichmann

Abstract read
In one paragraph

Article in Ecology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alexander J RobillardData Science Lab Office of the Chief Information Officer, Smithsonian Institution Washington District of Columbia USA.ORCID https://orcid.org/0000-0001-9782-5313
Michael G TriznaData Science Lab Office of the Chief Information Officer, Smithsonian Institution Washington District of Columbia USA.
Morgan Ruiz-TafurCenter for Conservation and Sustainability Smithsonian National Zoo and Conservation Biology Institute Washington District of Columbia USA.
Edgard Leonardo Dávila PanduroCenter for Conservation and Sustainability Smithsonian National Zoo and Conservation Biology Institute Washington District of Columbia USA.
C David de SantanaDivision of Fishes, Department of Vertebrate Zoology, MRC 159, National Museum of Natural History Smithsonian Institution Washington District of Columbia USA.ORCID https://orcid.org/0000-0002-7886-8569
Alexander E WhiteData Science Lab Office of the Chief Information Officer, Smithsonian Institution Washington District of Columbia USA.
Rebecca B DikowData Science Lab Office of the Chief Information Officer, Smithsonian Institution Washington District of Columbia USA.
Jessica L DeichmannCenter for Conservation and Sustainability Smithsonian National Zoo and Conservation Biology Institute Washington District of Columbia USA.ORCID https://orcid.org/0000-0002-2198-3515

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Given the sharp increase in agricultural and infrastructure development and the paucity of widespread data available to support conservation management decisions, a more rapid and accurate tool for identifying fish fauna in the world's largest freshwater ecosystem, the Amazon, is needed. Current strategies for identification of freshwater fishes require high levels of training and taxonomic expertise for morphological identification or genetic testing for species recognition at a molecular level. To overcome these challenges, we built an image masking model (U-Net) and a convolutional neural net (CNN) to classify Amazonian fish in photographs. Fish used to generate training data were collected and photographed in tributaries in seasonally flooded forests of the upper Morona River valley in Loreto, Peru in 2018 and 2019. Species identifications in the training images (

Indexed as

computer visionconservation technologydeep machine learningfreshwater fishNeotropicalspecies identification

Identifiers

PMID37143991
PMCPMC10151603

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.