Evidence map›Paper›PMID 37143122›Full record

ArticleJournal of experimental & clinical cancer research : CR2023

Functional characterization of age-dependent p16 epimutation reveals biological drivers and therapeutic targets for colorectal cancer.

Li Yang, Xiaomin Chen, Christy Lee, Jiejun Shi, Emily B Lawrence, Lanjing Zhang, Yumei Li, Nan Gao, Sung Yun Jung, Chad J Creighton and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal of experimental & clinical cancer research : CR, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Epigenome editing based treatment: Progresses and challenges.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
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  8. The Potential Role ofMicroorganisms · 2025
    Review
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  12. Epigenetics-targeted drugs: current paradigms and future challenges.Signal transduction and targeted therapy · 2024
    Review
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  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Li YangUSDA Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, TX, Houston, USA.
Xiaomin ChenUSDA Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, TX, Houston, USA.
Christy LeeDepartment of Statistics, University of California, Los Angeles, CA, USA.
Jiejun ShiDivision of Computational Biomedicine, Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA, USA.
Emily B LawrenceUSDA Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, TX, Houston, USA.
Lanjing ZhangDepartment of Pathology, Princeton Medical Center, Plainsboro, NJ, USA.
Yumei LiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Nan GaoDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Sung Yun JungDepartment of Biochemistry, Baylor College of Medicine, Houston, TX, USA.
Chad J CreightonHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Jingyi Jessica LiDepartment of Statistics, University of California, Los Angeles, CA, USA.
Ya CuiDivision of Computational Biomedicine, Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA, USA.
Sumimasa ArimuraDepartment of Medicine and Section of Gastroenterology and Hepatology, Baylor College of Medicine, Houston, TX, USA.
Yunping LeiCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Wei LiDivision of Computational Biomedicine, Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA, USA.
Lanlan ShenUSDA Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, TX, Houston, USA. Lanlan.Shen@bcm.edu.
Baylor College of Medicine · USChildren's Nutrition Research Center at Baylor College of Medicine · USUniversity of California, Irvine · USUniversity of California, Los Angeles · USEnvironmental and Occupational Health Sciences Institute · USRutgers, The State University of New Jersey · USTongji Hospital · CN

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Defining the Function of Age-Related Epimutation in Intestinal TumorigenesisR01CA233472 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Lanlan Shen · 2019 to 2026
$2.8M
Early Environment, Developmental Epigenetics, and Adult Colonic DiseasesR01HD100914 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI SHEN, LANLAN · 2020 to 2023
$1.2M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
Targeting aberrant promoter DNA methylation for anticancer therapyR21CA229727 · NCI · BAYLOR COLLEGE OF MEDICINE · PI SHEN, LANLAN · 2018 to 2019
$330k
Acquisition of 10X Genomics Chromium Instrument to Accelerate Genomic and Single Cell Transcriptomic ResearchS10OD025240 · OD · BAYLOR COLLEGE OF MEDICINE · PI DODDAPANENI, HARSHA VARDHAN · 2018 to 2018
$125k
NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA233472NCI NIH HHS R01CA233472NCI NIH HHS R21 CA229727NCI NIH HHS R21CA229727NEI NIH HHS P30 EY002520NICHD NIH HHS R01 HD100914NIDDK NIH HHS P30 DK056338NIH HHS S10 OD023469NIH HHS S10 OD025240
6 · The paper itself

Abstract

backgroundMethylation of the p16 promoter resulting in epigenetic gene silencing-known as p16 epimutation-is frequently found in human colorectal cancer and is also common in normal-appearing colonic mucosa of aging individuals. Thus, to improve clinical care of colorectal cancer (CRC) patients, we explored the role of age-related p16 epimutation in intestinal tumorigenesis.

methodsWe established a mouse model that replicates two common genetic and epigenetic events observed in human CRCs: Apc mutation and p16 epimutation. We conducted long-term survival and histological analysis of tumor development and progression. Colonic epithelial cells and tumors were collected from mice and analyzed by RNA sequencing (RNA-seq), quantitative PCR, and flow cytometry. We performed single-cell RNA sequencing (scRNA-seq) to characterize tumor-infiltrating immune cells throughout tumor progression. We tested whether anti-PD-L1 immunotherapy affects overall survival of tumor-bearing mice and whether inhibition of both epigenetic regulation and immune checkpoint is more efficacious.

resultsMice carrying combined Apc mutation and p16 epimutation had significantly shortened survival and increased tumor growth compared to those with Apc mutation only. Intriguingly, colon tumors with p16 epimutation exhibited an activated interferon pathway, increased expression of programmed death-ligand 1 (Pdl1), and enhanced infiltration of immune cells. scRNA-seq further revealed the presence of Foxp3

conclusionsOur study demonstrated that age-dependent p16 epimutation creates a permissive microenvironment for malignant transformation of polyps to colon cancer. Our findings provide a mechanistic rationale for future targeted therapy in patients with p16 epimutation.

Indexed as

Colonic NeoplasmsColorectal NeoplasmsAnimalsB7-H1 AntigenCarcinogenesisCell Transformation, NeoplasticDNA MethylationEpigenesis, GeneticHumansMiceTumor MicroenvironmentB7-H1 AntigenColon cancerEpigenetic and immunotherapyp16 epimutationTumor microenvironment

Identifiers

PMID37143122
PMCPMC10157929
OpenAlexW4368367383

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.