Evidence map›Paper›PMID 37142844›Full record

ArticleNature biomedical engineering2023

Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes.

Elizabeth A Phillips, Adam D Silverman, Aric Joneja, Michael Liu, Carl Brown, Paul Carlson, Christine Coticchia, Kristen Shytle, Alex Larsen, Nadish Goyal and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Nature biomedical engineering, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Elizabeth A Phillips *Sherlock Biosciences, Watertown, MA, USA.ORCID 0000-0002-8309-4801
Adam D Silverman *Sherlock Biosciences, Watertown, MA, USA.ORCID 0000-0002-1990-6609
Aric Joneja *Sherlock Biosciences, Watertown, MA, USA. ajoneja@sherlock.bio.ORCID 0000-0001-8665-212X
Michael LiuSherlock Biosciences, Watertown, MA, USA.
Carl BrownSherlock Biosciences, Watertown, MA, USA.
Paul CarlsonSherlock Biosciences, Watertown, MA, USA.
Christine CoticchiaSherlock Biosciences, Watertown, MA, USA.
Kristen ShytleSherlock Biosciences, Watertown, MA, USA.ORCID 0000-0002-0212-9962
Alex LarsenSherlock Biosciences, Watertown, MA, USA.
Nadish GoyalSherlock Biosciences, Watertown, MA, USA.
Vincent CaiSherlock Biosciences, Watertown, MA, USA.
Jason HuangSherlock Biosciences, Watertown, MA, USA.
Jennifer E HickeySherlock Biosciences, Watertown, MA, USA.
Emily RyanSherlock Biosciences, Watertown, MA, USA.
Joycelynn AcheampongSherlock Biosciences, Watertown, MA, USA.
Pradeep RameshSherlock Biosciences, Watertown, MA, USA.
James J CollinsWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.ORCID 0000-0002-5560-8246
William J BlakeSherlock Biosciences, Watertown, MA, USA.
Selecta Biosciences (United States) · USBioTracking (United States) · USBroad Institute · US

Funding

Bill and Melinda Gates Foundation (Bill & Melinda Gates Foundation) 022787
6 · The paper itself

Abstract

Nucleic acid assays are not typically deployable in point-of-care settings because they require costly and sophisticated equipment for the control of the reaction temperature and for the detection of the signal. Here we report an instrument-free assay for the accurate and multiplexed detection of nucleic acids at ambient temperature. The assay, which we named INSPECTR (for internal splint-pairing expression-cassette translation reaction), leverages the target-specific splinted ligation of DNA probes to generate expression cassettes that can be flexibly designed for the cell-free synthesis of reporter proteins, with enzymatic reporters allowing for a linear detection range spanning four orders of magnitude and peptide reporters (which can be mapped to unique targets) enabling highly multiplexed visual detection. We used INSPECTR to detect a panel of five respiratory viral targets in a single reaction via a lateral-flow readout and ~4,000 copies of viral RNA via additional ambient-temperature rolling circle amplification of the expression cassette. Leveraging synthetic biology to simplify workflows for nucleic acid diagnostics may facilitate their broader applicability at the point of care.

Indexed as

Nucleic AcidsRNA, ViralDNA ProbesSplintsTemperatureDNA ProbesNucleic AcidsRNA, Viral

Identifiers

PMID37142844
PMCPMC10727988
OpenAlexW4372333533

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.