Evidence map›Paper›PMID 37142762›Full record

ArticleNature medicine2023

An automated histological classification system for precision diagnostics of kidney allografts.

Daniel Yoo, Valentin Goutaudier, Gillian Divard, Juliette Gueguen, Brad C Astor, Olivier Aubert, Marc Raynaud, Zeynep Demir, Julien Hogan, Patricia Weng and 28 more

2 registry-linked trialsAbstract read
PubMed Publisher
In one paragraph

Article in Nature medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03652402 completednot on this map

The EUropean TRAnsplantation and INnovation Consortium for Risk Stratification in Kidney Transplant Patients

TypeobservationalSponsorAssistance Publique - Hôpitaux de ParisRan2018 to 2021Enrolled558ConditionsKidney Transplant Rejection, Kidney Transplantation, Risk Stratification, PrognosisArmskidney transplantation
NCT05306795 unknown statusnot on this map

Development, Application, and Validation of a Comprehensive Classification Automation System for Allograft Precision Diagnostics in Adult and Pediatric Kidney Transplant Biopsies

TypeobservationalSponsorParis Translational Research Center for Organ TransplantationRan2016 to 2022Enrolled4,000ConditionsKidney Transplant Rejection, Pathology
3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 53 citations in OpenAlex.

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  13. [Therapeutic response and monitoring of antibody-mediated renal graft rejection].Revista medica del Instituto Mexicano del Seguro Social · 2025
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  17. [Artificial intelligence in kidney transplant pathology].Pathologie (Heidelberg, Germany) · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

38 authors at 20 institutions in 5 countries.

Daniel Yoo *Université Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.ORCID http://orcid.org/0000-0002-2153-5093
Valentin Goutaudier *Université Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.ORCID http://orcid.org/0000-0001-6191-6889
Gillian DivardUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Juliette GueguenNéphrologie-Immunologie Clinique, Hôpital Bretonneau, CHU Tours, Tours, France.
Brad C AstorDivision of Nephrology, Department of Medicine, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Olivier AubertUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Marc RaynaudUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Zeynep DemirUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Julien HoganUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.ORCID http://orcid.org/0000-0003-4838-9417
Patricia WengPediatric Nephrology, David Geffen School of Medicine at UCLA, UCLA Mattel Children's Hospital, Los Angeles, CA, USA.
Jodi SmithDepartment of Pediatrics, University of Washington School of Medicine, Seattle Children's Hospital, Seattle, WA, USA.
Rouba GarroDivision of Pediatric Nephrology, Emory University School of Medicine, Children's Pediatric Institute, Atlanta, GA, USA.
Bradley A WaradyDivision of Pediatric Nephrology, University of Kansas City, Children's Mercy Hospital, Kansas City, MO, USA.
Rima S ZahrDivision of Pediatric Nephrology and Hypertension, University of Tennessee Health Science Center, Le Bonheur Children's Hospital, Memphis, TN, USA.
Marta SablikUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Katherine TwombleyAcute Dialysis Units, Pediatric Kidney Transplant, Medical University of South Carolina, Charleston, SC, USA.ORCID http://orcid.org/0000-0003-2073-2834
Lionel CouziDepartment of Nephrology, Transplantation, Dialysis and Apheresis, CHU Bordeaux, Bordeaux, France.
Thierry BerneyDivision of Abdominal and Transplantation Surgery, Department of Surgery, Faculty of Medicine, Geneva University Hospitals, Geneva, Switzerland.ORCID http://orcid.org/0000-0002-4230-9378
Olivia BoyerDivision of Pediatric Nephrology, Necker Hospital, Université Paris Cité, Paris, France.ORCID http://orcid.org/0000-0002-3957-1359
Jean-Paul Duong-Van-HuyenDepartment of Pathology, Necker-Enfants Malades Hospital, Assistance Publique - Hôpitaux de Paris, Paris, France.
Magali GiralNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, ITUN, Nantes, France.
Alaa AlsadiDepartment of Pathology, University of Wisconsin, Madison, WI, USA.
Pierre A GourraudNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, ITUN, Nantes, France.
Emmanuel MorelonDepartment of Transplantation, Edouard Herriot University Hospital, Hospices Civils de Lyon, University Lyon, University of Lyon I, Lyon, France.
Moglie Le QuintrecDepartment of Nephrology, Centre Hospitalier Universitaire Montpellier, Montpellier, France.
Sophie BrouardNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, ITUN, Nantes, France.
Christophe LegendreUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Dany AnglicheauDepartment of Kidney Transplantation, Necker Hospital, Assistance Publique - Hôpitaux de Paris, Paris, France.ORCID http://orcid.org/0000-0001-5793-6174
Jean VillardDivision of Transplantation Immunology, University Hospital of Geneva, Geneva, Switzerland.ORCID http://orcid.org/0000-0003-2667-7506
Weixiong ZhongDepartment of Pathology, University of Wisconsin, Madison, WI, USA.
Nassim KamarDepartment of Nephrology-Dialysis-Transplantation, Centre Hospitalier, Universitaire de Toulouse, Toulouse, France.
Oriol BestardDepartment of Nephrology and Kidney Transplantation, Vall d'Hebrón University Hospital, Barcelona, Spain.ORCID http://orcid.org/0000-0001-9468-7920
Arjang DjamaliDepartment of Medicine, Maine Medical Center, Portland, ME, USA.
Klemens BuddeDepartment of Nephrology and Critical Care Medicine, Charité - Universitätsmedizin Berlin, Freie Universität Berlin, Berlin Institute of Health, Berlin, Germany.ORCID http://orcid.org/0000-0002-7929-5942
Mark HaasComprehensive Transplant Center, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Carmen LefaucheurUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Marion RabantUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France.
Alexandre LoupyUniversité Paris Cité, INSERM U970, Paris Institute for Transplantation and Organ Regeneration, Paris, France. alexandre.loupy@inserm.fr.ORCID http://orcid.org/0000-0003-3388-7747
Inserm · FRUniversity of Wisconsin–Madison · USHôpital Necker-Enfants Malades · FRUniversity Hospital of Geneva · CHAssistance Publique – Hôpitaux de Paris · FRBerlin Institute of Health at Charité - Universitätsmedizin Berlin · DECedars-Sinai Medical Center · USCentre Hospitalier Universitaire de Montpellier · FRCentre Hospitalier Universitaire de Toulouse · FRCentre Hospitalier Universitaire de Tours · FRChildren's Mercy Hospital · USEmory University · USMaine Medical Center · USMattel Children's Hospital · USMedical University of South Carolina · USSeattle Children's Hospital · USUniversité Claude Bernard Lyon 1 · FRUniversité Paris Cité · FRUniversity of Tennessee Health Science Center · USVall d'Hebron Hospital Universitari · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For three decades, the international Banff classification has been the gold standard for kidney allograft rejection diagnosis, but this system has become complex over time with the integration of multimodal data and rules, leading to misclassifications that can have deleterious therapeutic consequences for patients. To improve diagnosis, we developed a decision-support system, based on an algorithm covering all classification rules and diagnostic scenarios, that automatically assigns kidney allograft diagnoses. We then tested its ability to reclassify rejection diagnoses for adult and pediatric kidney transplant recipients in three international multicentric cohorts and two large prospective clinical trials, including 4,409 biopsies from 3,054 patients (62.05% male and 37.95% female) followed in 20 transplant referral centers in Europe and North America. In the adult kidney transplant population, the Banff Automation System reclassified 83 out of 279 (29.75%) antibody-mediated rejection cases and 57 out of 105 (54.29%) T cell-mediated rejection cases, whereas 237 out of 3,239 (7.32%) biopsies diagnosed as non-rejection by pathologists were reclassified as rejection. In the pediatric population, the reclassification rates were 8 out of 26 (30.77%) for antibody-mediated rejection and 12 out of 39 (30.77%) for T cell-mediated rejection. Finally, we found that reclassification of the initial diagnoses by the Banff Automation System was associated with an improved risk stratification of long-term allograft outcomes. This study demonstrates the potential of an automated histological classification to improve transplant patient care by correcting diagnostic errors and standardizing allograft rejection diagnoses.ClinicalTrials.gov registration: NCT05306795 .

Indexed as

KidneyKidney TransplantationAdultAllograftsBiopsyChildFemaleGraft RejectionHumansMaleProspective StudiesTransplantation, Homologous

Identifiers

PMID37142762
OpenAlexW4368374020

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.