Evidence map›Paper›PMID 37142601›Full record

ArticleNature communications2023

Genomic mutation landscape of skin cancers from DNA repair-deficient xeroderma pigmentosum patients.

Andrey A Yurchenko, Fatemeh Rajabi, Tirzah Braz-Petta, Hiva Fassihi, Alan Lehmann, Chikako Nishigori, Jinxin Wang, Ismael Padioleau, Konstantin Gunbin, Leonardo Panunzi and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

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  9. Nanorate sequencing reveals theProceedings of the National Academy of Sciences of the United States of America · 2025
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  15. Immune checkpoint inhibitors for children with xeroderma pigmentosum and advanced cutaneous squamous cell carcinoma: A case presentation and brief review.Journal der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : JDDG · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 4 countries.

Andrey A Yurchenko *INSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.ORCID 0000-0002-2239-6902
Fatemeh Rajabi *INSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Tirzah Braz-PettaDepartamento de Biologia Celular e Genética, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho, s/n, Natal, 59078-970, Brazil.
Hiva FassihiNational Xeroderma Pigmentosum Service, Department of Photodermatology, St John's Institute of Dermatology, Guy's and St Thomas' Foundation Trust, London, SE1 7EH, UK.ORCID 0000-0002-2601-1715
Alan LehmannNational Xeroderma Pigmentosum Service, Department of Photodermatology, St John's Institute of Dermatology, Guy's and St Thomas' Foundation Trust, London, SE1 7EH, UK.
Chikako NishigoriDivision of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan.
Jinxin WangINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Ismael PadioleauINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.ORCID 0000-0003-4935-3248
Konstantin GunbinINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Leonardo PanunziINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Fanny Morice-PicardService de Dermatologie, CHU de Bordeaux, Bordeaux, France.
Pierre LaplanteINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Caroline RobertINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.ORCID 0000-0002-9493-0238
Patricia L KannoucheCNRS UMR9019 Genome Integrity and Cancers, Institut Gustave Roussy, Université Paris-Saclay, Villejuif, France.ORCID 0000-0002-6050-3457
Carlos F M MenckDepartment of Microbiology, Institute of Biomedical Sciences, University of Sao Paulo, Sao Paulo, SP, Brazil.ORCID 0000-0003-1941-0694
Alain SarasinCNRS UMR9019 Genome Integrity and Cancers, Institut Gustave Roussy, Université Paris-Saclay, Villejuif, France.
Sergey I NikolaevINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France. sergey.nikolaev@gustaveroussy.fr.ORCID 0000-0001-8587-2307
Inserm · FRCentre National de la Recherche Scientifique · FRCentre Hospitalier Universitaire de Bordeaux · FRGuy's and St Thomas' NHS Foundation Trust · GBKobe University · JPUniversidade de São Paulo · BRUniversidade Federal do Rio Grande do Norte · BRUniversity of Sussex · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xeroderma pigmentosum (XP) is a genetic disorder caused by mutations in genes of the Nucleotide Excision Repair (NER) pathway (groups A-G) or in Translesion Synthesis DNA polymerase η (V). XP is associated with an increased skin cancer risk, reaching, for some groups, several thousand-fold compared to the general population. Here, we analyze 38 skin cancer genomes from five XP groups. We find that the activity of NER determines heterogeneity of the mutation rates across skin cancer genomes and that transcription-coupled NER extends beyond the gene boundaries reducing the intergenic mutation rate. Mutational profile in XP-V tumors and experiments with POLH knockout cell line reveal the role of polymerase η in the error-free bypass of (i) rare TpG and TpA DNA lesions, (ii) 3' nucleotides in pyrimidine dimers, and (iii) TpT photodimers. Our study unravels the genetic basis of skin cancer risk in XP and provides insights into the mechanisms reducing UV-induced mutagenesis in the general population.

Indexed as

Skin NeoplasmsXeroderma PigmentosumDNA RepairGenomicsHumansMutationUltraviolet Rays

Identifiers

PMID37142601
PMCPMC10160032
OpenAlexW4368368417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.