Evidence map›Paper›PMID 37142569›Full record

ArticleNature communications2023

Chemical imaging reveals diverse functions of tricarboxylic acid metabolites in root growth and development.

Tao Zhang, Sarah E Noll, Jesus T Peng, Amman Klair, Abigail Tripka, Nathan Stutzman, Casey Cheng, Richard N Zare, Alexandra J Dickinson

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Tao Zhang *Cell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-3024-9128
Sarah E Noll *Department of Chemistry, Stanford University, Stanford, CA, 94305, USA.ORCID 0009-0005-1115-4712
Jesus T PengCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-5815-6062
Amman KlairCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.
Abigail TripkaCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.
Nathan StutzmanCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-6722-5656
Casey ChengCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0001-6317-142X
Richard N ZareDepartment of Chemistry, Stanford University, Stanford, CA, 94305, USA. zare@stanford.edu.ORCID 0000-0001-5266-4253
Alexandra J DickinsonCell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093, USA. adickinson@ucsd.edu.ORCID 0000-0002-7840-5636
University of California San Diego · USPomona College · USStanford Medicine · US

Funding

Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Illuminating the chemical biology of stem cell decisions in plant rootsR35GM147216 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Alexandra Jazz Dickinson · 2022 to 2026
$2.0M
NIGMS NIH HHS R35 GM147216NIGMS NIH HHS T32 GM133351
6 · The paper itself

Abstract

Understanding how plants grow is critical for agriculture and fundamental for illuminating principles of multicellular development. Here, we apply desorption electrospray ionization mass spectrometry imaging (DESI-MSI) to the chemical mapping of the developing maize root. This technique reveals a range of small molecule distribution patterns across the gradient of stem cell differentiation in the root. To understand the developmental logic of these patterns, we examine tricarboxylic acid (TCA) cycle metabolites. In both Arabidopsis and maize, we find evidence that elements of the TCA cycle are enriched in developmentally opposing regions. We find that these metabolites, particularly succinate, aconitate, citrate, and α-ketoglutarate, control root development in diverse and distinct ways. Critically, the developmental effects of certain TCA metabolites on stem cell behavior do not correlate with changes in ATP production. These results present insights into development and suggest practical means for controlling plant growth.

Indexed as

Spectrometry, Mass, Electrospray IonizationTricarboxylic AcidsCitric Acid CycleDiagnostic ImagingGrowth and DevelopmentTricarboxylic Acids

Identifiers

PMID37142569
PMCPMC10160030
OpenAlexW4368366405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.