Evidence map›Paper›PMID 37140754›Full record

ArticleAntonie van Leeuwenhoek2023

Unveiling the genomic potential of a novel thermostable glycoside hydrolases producing Neobacillus sedimentimangrovi UE25.

Uroosa Ejaz, Faizan Saleem, Rozina Rashid, Khwaja Ali Hasan, Muhammad Noman Syed, Muhammad Sohail

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Article in Antonie van Leeuwenhoek, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Uroosa EjazDepartment of Biosciences, Faculty of Life Sciences, Shaheed Zulfikar Ali Bhutto Institute of Science and Technology (SZABIST), Karachi, 75600, Pakistan.
Faizan SaleemDepartment of Biology, McMaster University, Hamilton, ON, L8S 4L8, Canada.
Rozina RashidDepartment of Microbiology, University of Karachi, Karachi, 75600, Pakistan.
Khwaja Ali HasanMolecular and Structural Biology Research Unit, Department of Biochemistry, University of Karachi, Karachi, 75270, Pakistan.
Muhammad Noman SyedNutritional Biochemistry Research Unit, Department of Biochemistry, University of Karachi, Karachi, 75270, Pakistan.
Muhammad SohailDepartment of Microbiology, University of Karachi, Karachi, 75600, Pakistan. msohail@uok.edu.pk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic and enzymatic potential of Neobacillus sedimentimangrovi has not been assembled to date. Here, we report a high-quality genome assembly of thermophilic bacterium Neobacillus sedimentimangrovi UE25 using Illumina Hi-seq 2500. The strain was isolated from a crocodile pond Manghopir, Karachi, Pakistan. QUAST quality parameters showed 37.75% GC content and exhibited the genome into 110 contigs, with a total size of 3,230,777 bases. Genome of N. sedimentimangrovi UE25 harbors phage mediated DNA through horizontal gene exchange from the phages, symbiotic and pathogenic bacteria. Most of the phage genome encodes for hypothetical proteins, protease, and phage assembly proteins. Gene clusters encoding the intrinsic resistance to glycopeptides, isoniazid, rifamycin, elfamycin, macrolide, aminoglycosides, tetracycline and fluoroquinolone were identified into the genome. Since, the strain has been reported for the production of many industrially important thermostable enzymes, therefore, the genomic data of thermostable enzymes might be helpful to employ this species in commercial sectors. Probing genes of multiple thermostable glycoside hydrolase enzymes especially xylanases of N. sedimentimangrovi UE25 showed genetic diversity among the genes and confer the industrial importance of this microorganism. Furthermore, the genome of N. sedimentimangrovi will greatly improve our understanding of its genetics and evolution.

Indexed as

BacillaceaeGlycoside HydrolasesBacteriaGenomicsIsoniazidGlycoside HydrolasesIsoniazidDraft genomeGH-hydrolasesNeobacillus sedimentimangroviPhage mediated genesThermostable enzymesXylanase

Identifiers

PMID37140754

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.