Evidence map›Paper›PMID 37140595›Full record

ArticleEuropean biophysics journal : EBJ2023

Multi intercalators FRET enhanced detection of minute amounts of DNA.

Luca Ceresa, Jose Chavez, Magdalena M Bus, Bruce Budowle, Emma Kitchner, Joseph Kimball, Ignacy Gryczynski, Zygmunt Gryczynski

Abstract read
PubMed Publisher
In one paragraph

Article in European biophysics journal : EBJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Luca CeresaDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA. luca.ceresa@tcu.edu.ORCID http://orcid.org/0000-0001-8771-496X
Jose ChavezDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA.
Magdalena M BusCenter for Human Identification, University of North Texas Health Science Center, 3500 Camp Bowie Blvd., Fort Worth, TX, 76107, USA.
Bruce BudowleDepartment of Forensic Medicine, University of Helsinki, Helsinki, Finland.
Emma KitchnerDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA.
Joseph KimballDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA.
Ignacy GryczynskiDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA.
Zygmunt GryczynskiDepartment of Physics and Astronomy, Texas Christian University, Fort Worth, TX, 76109, USA.
Texas Christian University · USUniversity of Helsinki · FIUniversity of North Texas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel approach is presented that increases sensitivity and specificity for detecting minimal traces of DNA in liquid and on solid samples. Förster Resonance Energy Transfer (FRET) from YOYO to Ethidium Bromide (EtBr) substantially increases the signal from DNA-bound EtBr highly enhancing sensitivity and specificity for DNA detection. The long fluorescence lifetime of the EtBr acceptor, when bound to DNA, allows for multi-pulse pumping with time gated (MPPTG) detection, which highly increases the detectable signal of DNA-bound EtBr. A straightforward spectra/image subtraction eliminates sample background and allows for a huge increase in the overall detection sensitivity. Using a combination of FRET and MPPTG detection an amount as small as 10 pg of DNA in a microliter sample can be detected without any additional sample purification/manipulation or use of amplification technologies. This amount of DNA is comparable to the DNA content of a one to two human cells. Such a detection method based on simple optics opens the potential for robust, highly sensitive DNA detection/imaging in the field, quick evaluation/sorting (i.e., triaging) of collected DNA samples, and can support various diagnostic assays.

Indexed as

Fluorescence Resonance Energy TransferIntercalating AgentsDNAHumansSensitivity and SpecificityDNAIntercalating AgentsDNA detectionDNA intercalatorFörster resonance energy transferMultipulsingTime resolved emission spectraTime resolved spectroscopy

Identifiers

PMID37140595
OpenAlexW4368358069

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.