Evidence map›Paper›PMID 37140445›Full record

ArticleCancer discovery2023

An African-Specific Variant of TP53 Reveals PADI4 as a Regulator of p53-Mediated Tumor Suppression.

Alexandra Indeglia, Jessica C Leung, Sven A Miller, Julia I-Ju Leu, James F Dougherty, Nicole L Clarke, Nicole A Kirven, Chunlei Shao, Lei Ke, Scott Lovell and 17 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer discovery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  6. Review
  7. Review
  8. Article
  9. Citrullination negatively regulates the functions of the p53 protein and opposes its ubiquitination and degradation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Review
  12. Clustering ofiScience · 2024
    Article
  13. Article
  14. Review
  15. Review
  16. Emerging insights into ethnic-specific TP53 germline variants.Journal of the National Cancer Institute · 2023
    Review
  17. Article
  18. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 1 country.

Alexandra IndegliaProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-9035-4969
Jessica C LeungProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-9682-9160
Sven A MillerProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0001-7295-5592
Julia I-Ju LeuDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0002-4786-5939
James F DoughertyProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0003-0702-3013
Nicole L ClarkeProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-3923-3579
Nicole A KirvenProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-2097-617X
Chunlei ShaoProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0003-4322-4883
Lei KeProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0009-0002-7441-0697
Scott LovellDel Shankel Structural Biology Center, The University of Kansas, Lawrence, Kansas.ORCID 0000-0002-3215-4472
Thibaut BarnoudProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-5588-6281
David Y LuProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-9932-4336
Cindy LinProgram in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-9930-0411
Toshitha KannanProgram in Gene Expression and Regulation, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0009-0007-7775-6585
Kevin P BattaileNYX, New York Structural Biology Center, Upton, New York.ORCID 0000-0003-0833-3259
Tyler Hong Loong YangProgram in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0009-0009-2019-4838
Isabela Batista OlivaProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0009-0008-2328-062X
Daniel T ClaiborneProgram in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-2091-1456
Peter VogelDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0002-7535-0545
Lijun LiuDel Shankel Structural Biology Center, The University of Kansas, Lawrence, Kansas.ORCID 0000-0003-0514-281X
Qin LiuProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-9964-580X
Yulia NefedovaProgram in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-5121-9294
Joel CasselProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-8465-8739
Noam AuslanderProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-2037-1517
Andrew V KossenkovProgram in Gene Expression and Regulation, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0002-1536-0418
John KaranicolasProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-0300-726X
Maureen E MurphyProgram in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.ORCID 0000-0001-7644-7296
The Wistar Institute · USFox Chase Cancer Center · USUniversity of Kansas · USNew York Structural Biology Center · USSt. Jude Children's Research Hospital · USUniversity of Pennsylvania · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Eric Andrew Ross · 1985 to 2026
$138.8M
Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Aaron Robert Goldman · 1985 to 2026
$75.9M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GARY D. WU · 1997 to 2026
$32.5M
TRAINING PROGRAM IN BASIC CANCER RESEARCHT32CA009171 · NCI · WISTAR INSTITUTE · PI Alessandro Gardini · 1985 to 2026
$15.3M
TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
Functional Analysis of p53 Polymorphic Variants - Diversity SupplementR01CA102184 · NCI · WISTAR INSTITUTE · PI Maureen E. Murphy · 2005 to 2026
$7.4M
The impact of coding region variants on mutant p53 biologyR01CA238611 · NCI · WISTAR INSTITUTE · PI MURPHY, MAUREEN E. · 2020 to 2024
$2.2M
An Eiger2 XE 9M detector for the NYSBC-operated NYX beamline at NSLS-IIS10OD030394 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI BATTAILE, KEVIN P · 2021 to 2021
$1.8M
Integrative Approach to Comprehensive Analysis of High Throughput Data on a Cancer Center LevelR50CA211199 · NCI · WISTAR INSTITUTE · PI Andrew V Kossenkov · 2016 to 2026
$1.6M
Modeling cancer evolution for prediction with neural networks: methods and applicationsR00CA252025 · NCI · WISTAR INSTITUTE · PI AUSLANDER, NOAM · 2021 to 2023
$747k
Genetics of Tumor Suppression by p53R00CA241367 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BARNOUD, THIBAUT · 2022 to 2024
$747k
NCI NIH HHS K99 CA252025NCI NIH HHS P30 CA006927NCI NIH HHS P30 CA010815NCI NIH HHS R00 CA241367NCI NIH HHS R00 CA252025NCI NIH HHS R01 CA102184NCI NIH HHS R01 CA238611NCI NIH HHS R50 CA211199NCI NIH HHS T32 CA009035NCI NIH HHS T32 CA009171NIDDK NIH HHS P30 DK050306NIGMS NIH HHS T32 GM008216NIH HHS S10 OD030394
6 · The paper itself

Abstract

TP53 is the most frequently mutated gene in cancer, yet key target genes for p53-mediated tumor suppression remain unidentified. Here, we characterize a rare, African-specific germline variant of TP53 in the DNA-binding domain Tyr107His (Y107H). Nuclear magnetic resonance and crystal structures reveal that Y107H is structurally similar to wild-type p53. Consistent with this, we find that Y107H can suppress tumor colony formation and is impaired for the transactivation of only a small subset of p53 target genes; this includes the epigenetic modifier PADI4, which deiminates arginine to the nonnatural amino acid citrulline. Surprisingly, we show that Y107H mice develop spontaneous cancers and metastases and that Y107H shows impaired tumor suppression in two other models. We show that PADI4 is itself tumor suppressive and that it requires an intact immune system for tumor suppression. We identify a p53-PADI4 gene signature that is predictive of survival and the efficacy of immune-checkpoint inhibitors. SIGNIFICANCE: We analyze the African-centric Y107H hypomorphic variant and show that it confers increased cancer risk; we use Y107H in order to identify PADI4 as a key tumor-suppressive p53 target gene that contributes to an immune modulation signature and that is predictive of cancer survival and the success of immunotherapy. See related commentary by Bhatta and Cooks, p. 1518. This article is highlighted in the In This Issue feature, p. 1501.

Indexed as

Genes, p53NeoplasmsTumor Suppressor Protein p53African PeopleAnimalsHumansMiceProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4PADI4 protein, humanPadi4 protein, mouseProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID37140445
PMCPMC10326602
OpenAlexW4368361048

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.