Evidence map›Paper›PMID 37138119›Full record

ReviewChromosoma2023

Regulation of the epigenome through RNA modifications.

Emmely A Patrasso, Sweta Raikundalia, Daniel Arango

Open access · greenAbstract readReview
In one paragraph

Review in Chromosoma, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. mInsects · 2026
    Review
  2. NNature plants · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. FTO controls CD8Cell death & disease · 2025
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Emmely A PatrassoDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Sweta RaikundaliaDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Daniel ArangoDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA. daniel.arangotamayo@northwestern.edu.
IMC University of Applied Sciences Krems · ATNorthwestern University · USRobert H. Lurie Comprehensive Cancer Center of Northwestern University

Funding

Mechanisms of translation regulation by N4-acetylcytidine in cancer cellsR00CA245035 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARANGO, DANIEL · 2021 to 2023
$747k
NCI NIH HHS K99 CA245035NCI NIH HHS R00 CA245035
6 · The paper itself

Abstract

Chemical modifications of nucleotides expand the complexity and functional properties of genomes and transcriptomes. A handful of modifications in DNA bases are part of the epigenome, wherein DNA methylation regulates chromatin structure, transcription, and co-transcriptional RNA processing. In contrast, more than 150 chemical modifications of RNA constitute the epitranscriptome. Ribonucleoside modifications comprise a diverse repertoire of chemical groups, including methylation, acetylation, deamination, isomerization, and oxidation. Such RNA modifications regulate all steps of RNA metabolism, including folding, processing, stability, transport, translation, and RNA's intermolecular interactions. Initially thought to influence all aspects of the post-transcriptional regulation of gene expression exclusively, recent findings uncovered a crosstalk between the epitranscriptome and the epigenome. In other words, RNA modifications feedback to the epigenome to transcriptionally regulate gene expression. The epitranscriptome achieves this feat by directly or indirectly affecting chromatin structure and nuclear organization. This review highlights how chemical modifications in chromatin-associated RNAs (caRNAs) and messenger RNAs (mRNAs) encoding factors involved in transcription, chromatin structure, histone modifications, and nuclear organization affect gene expression transcriptionally.

Indexed as

ChromatinEpigenomeDNA MethylationGene Expression RegulationRNARNA, MessengerRNA Processing, Post-TranscriptionalChromatinRNARNA, MessengerEpigenomeEpitranscriptomeGene expressionRNA modifications

Identifiers

PMID37138119
PMCPMC10524150
OpenAlexW4367835958

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.