Evidence map›Paper›PMID 37138077›Full record

ArticleNature2023

Structural atlas of a human gut crassvirus.

Oliver W Bayfield, Andrey N Shkoporov, Natalya Yutin, Ekaterina V Khokhlova, Jake L R Smith, Dorothy E D P Hawkins, Eugene V Koonin, Colin Hill, Alfred A Antson

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Article
  5. Article
  6. Article
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  17. Review
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  19. Review
  20. Ejectosome ofPNAS nexus · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Oliver W BayfieldYork Structural Biology Laboratory, Department of Chemistry, University of York, York, UK. oliver.bayfield@york.ac.uk.ORCID 0000-0003-1421-7780
Andrey N ShkoporovAPC Microbiome Ireland and School of Microbiology, University College Cork, Cork, Ireland.ORCID 0000-0002-5547-8672
Natalya YutinNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-3633-5123
Ekaterina V KhokhlovaAPC Microbiome Ireland and School of Microbiology, University College Cork, Cork, Ireland.
Jake L R SmithYork Structural Biology Laboratory, Department of Chemistry, University of York, York, UK.
Dorothy E D P HawkinsYork Structural Biology Laboratory, Department of Chemistry, University of York, York, UK.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-3943-8299
Colin HillAPC Microbiome Ireland and School of Microbiology, University College Cork, Cork, Ireland.ORCID 0000-0002-8527-1445
Alfred A AntsonYork Structural Biology Laboratory, Department of Chemistry, University of York, York, UK. fred.antson@york.ac.uk.ORCID 0000-0002-4533-3816
University of York · GBUniversity College Cork · IENational Institutes of Health · US

Funding

Comparative Analysis Of Completely Sequenced GenomesZIALM000073 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$43.1M
Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NIAID NIH HHSNIGMS NIH HHS R01 GM129325NLM NIH HHSWellcome Trust
6 · The paper itself

Abstract

CrAssphage and related viruses of the order Crassvirales (hereafter referred to as crassviruses) were originally discovered by cross-assembly of metagenomic sequences. They are the most abundant viruses in the human gut, are found in the majority of individual gut viromes, and account for up to 95% of the viral sequences in some individuals

Indexed as

DNA VirusesIntestinesViral ProteinsVirionBacteroidesCapsidCryoelectron MicroscopyHumansProtein FoldingProtein UnfoldingVirus AssemblyViral Proteins

Identifiers

PMID37138077
PMCPMC10172136
OpenAlexW4367856503

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.