Evidence map›Paper›PMID 37133800›Full record

ArticleApplied microbiology and biotechnology2023

CkP1 bacteriophage, a S16-like myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibers.

Hugo Oliveira, Sílvio Santos, Diana P Pires, Dimitri Boeckaerts, Graça Pinto, Rita Domingues, Jennifer Otero, Yves Briers, Rob Lavigne, Mathias Schmelcher and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

Hugo OliveiraCentre of Biological Engineering, University of Minho, Braga, Portugal. hugooliveira@deb.uminho.pt.ORCID http://orcid.org/0000-0001-9564-5714
Sílvio SantosCentre of Biological Engineering, University of Minho, Braga, Portugal.ORCID http://orcid.org/0000-0003-0801-8080
Diana P PiresCentre of Biological Engineering, University of Minho, Braga, Portugal.ORCID http://orcid.org/0000-0003-2055-5743
Dimitri BoeckaertsDepartment of Biotechnology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-7668-2840
Graça PintoCentre of Biological Engineering, University of Minho, Braga, Portugal.ORCID http://orcid.org/0000-0002-9348-7553
Rita DominguesCentre of Biological Engineering, University of Minho, Braga, Portugal.
Jennifer OteroCentre of Biological Engineering, University of Minho, Braga, Portugal.
Yves BriersDepartment of Biotechnology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-7723-1040
Rob LavigneDepartment of Biosystems, KU Leuven, Louvain, Belgium.ORCID http://orcid.org/0000-0001-7377-1314
Mathias SchmelcherInstitute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-3535-3861
Andreas DötschMax Rubner-Institute, Department of Physiology and Biochemistry of Nutrition, Karlsruhe, Germany.ORCID http://orcid.org/0000-0001-9086-2584
Joana AzeredoCentre of Biological Engineering, University of Minho, Braga, Portugal. jazeredo@deb.uminho.pt.ORCID http://orcid.org/0000-0002-5180-7133
University of Minho · PTGhent University · BEETH Zurich · CHKU Leuven · BEMax Rubner Institut · DEUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Citrobacter koseri is an emerging Gram-negative bacterial pathogen, which causes urinary tract infections. We isolated and characterized a novel S16-like myovirus CKP1 (vB_CkoM_CkP1), infecting C. koseri. CkP1 has a host range covering the whole C. koseri species, i.e., all strains that were tested, but does not infect other species. Its linear 168,463-bp genome contains 291 coding sequences, sharing sequence similarity with the Salmonella phage S16. Based on surface plasmon resonance and recombinant green florescence protein fusions, the tail fiber (gp267) was shown to decorate C. koseri cells, binding with a nanomolar affinity, without the need of accessory proteins. Both phage and the tail fiber specifically bind to bacterial cells by the lipopolysaccharide polymer. We further demonstrate that CkP1 is highly stable towards different environmental conditions of pH and temperatures and is able to control C. koseri cells in urine samples. Altogether, CkP1 features optimal in vitro characteristics to be used both as a control and detection agent towards drug-resistant C. koseri infections. KEY POINTS: • CkP1 infects all C. koseri strains tested • CkP1 recognizes C. koseri lipopolysaccharide through its long tail fiber • Both phage CkP1 and its tail fiber can be used to treat or detect C. koseri pathogens.

Indexed as

BacteriophagesCitrobacter koseriHost SpecificityLipopolysaccharidesLipopolysaccharidesBacterial infectionBacteriophageCitrobacterControlDiagnosticsLong tail fiber

Identifiers

PMID37133800
PMCPMC10175313
OpenAlexW4367835146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.