Evidence map›Paper›PMID 37131237›Full record

ArticleVirology journal2023

Uncovering neglected subtypes and zoonotic transmission of Hepatitis E virus (HEV) in Brazil.

Debora Regina Lopes Dos Santos, Ricardo Durães-Carvalho, Noemi Rovaris Gardinali, Lais Ceschini Machado, Vanessa Salete de Paula, Gabriel da Luz Wallau, Jaqueline Mendes de Oliveira, Lindomar José Pena, Marcelo Alves Pinto, Laura Helena Vega Gonzalez Gil and 1 more

Abstract read
In one paragraph

Article in Virology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Debora Regina Lopes Dos SantosDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (IAM- FIOCRUZ), Recife, Pernambuco, Brazil.
Ricardo Durães-CarvalhoSão Paulo School of Medicine, Department of Microbiology, Immunology and Parasitology, Federal University of São Paulo (UNIFESP), São Paulo, SP, Brazil.
Noemi Rovaris GardinaliLaboratório de Desenvolvimento Tecnológico em Virologia (LADTV) , Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (Fiocruz), Rio de Janeiro, Brazil.
Lais Ceschini MachadoDepartment of Entomology and Bioinformatic Core, Oswaldo Cruz Foundation-Fiocruz, Recife, PE, Brazil.
Vanessa Salete de PaulaLaboratory of Molecular Virology, Oswaldo Cruz Institute, Oswaldo Cruz Foundation (IOC- FIOCRUZ), Rio de Janeiro, Brazil.
Gabriel da Luz WallauDepartment of Entomology and Bioinformatic Core, Oswaldo Cruz Foundation-Fiocruz, Recife, PE, Brazil.
Jaqueline Mendes de OliveiraLaboratório de Desenvolvimento Tecnológico em Virologia (LADTV) , Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (Fiocruz), Rio de Janeiro, Brazil.
Lindomar José PenaDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (IAM- FIOCRUZ), Recife, Pernambuco, Brazil.
Marcelo Alves PintoLaboratório de Desenvolvimento Tecnológico em Virologia (LADTV) , Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (Fiocruz), Rio de Janeiro, Brazil.
Laura Helena Vega Gonzalez GilDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (IAM- FIOCRUZ), Recife, Pernambuco, Brazil.
Edmilson Ferreira de Oliveira-FilhoDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (IAM- FIOCRUZ), Recife, Pernambuco, Brazil. edmilson.oliveira@charite.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis E virus (HEV) circulation in humans and swine has been extensively studied in South America over the last two decades. Nevertheless, only 2.1% of reported HEV strains are available as complete genome sequences. Therefore, many clinical, epidemiological, and evolutionary aspects of circulating HEV in the continent still need to be clarified. Here, we conducted a retrospective evolutionary analysis of one human case and six swine HEV strains previously reported in northeastern, southern, and southeastern Brazil. We obtained two complete and four nearly complete genomic sequences. Evolutionary analysis comparing the whole genomic and capsid gene sequences revealed high genetic variability. This included the circulation of at least one unrecognized unique South American subtype. Our results corroborate that sequencing the whole capsid gene could be used as an alternative for HEV subtype assignment in the absence of complete genomic sequences. Moreover, our results substantiate the evidence for zoonotic transmission by comparing a larger genomic fragment recovered from the sample of the autochthonous human hepatitis E case. Further studies should continuously investigate HEV genetic diversity and zoonotic transmission of HEV in South America.

Indexed as

Hepatitis E virusAnimalsBrazilGenotypeHumansPhylogenyRetrospective StudiesSequence Analysis, DNASwineGenetic divergenceHepatitis EHEVSubtypes assignmentZoonotic transmission

Identifiers

PMID37131237
PMCPMC10152778

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.