Evidence map›Paper›PMID 37130807›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2023

Newly synthesized glycoprotein profiling to identify molecular signatures of warm ischemic injury in donor lungs.

Zihan Ling, Kentaro Noda, Brian L Frey, Michael Hu, Shierly W Fok, Lloyd M Smith, Pablo G Sanchez, Xi Ren

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Zihan LingDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States.
Kentaro NodaDivision of Lung Transplant and Lung Failure, Department of Cardiothoracic Surgery, University of Pittsburgh, Pittsburgh, Pennsylvania, United States.ORCID 0000-0001-8921-1944
Brian L FreyDepartment of Chemistry, University of Wisconsin, Madison, Wisconsin, United States.ORCID 0000-0002-0397-7269
Michael HuDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States.ORCID 0000-0003-3979-0196
Shierly W FokDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States.
Lloyd M SmithDepartment of Chemistry, University of Wisconsin, Madison, Wisconsin, United States.
Pablo G SanchezDivision of Lung Transplant and Lung Failure, Department of Cardiothoracic Surgery, University of Pittsburgh, Pittsburgh, Pennsylvania, United States.
Xi RenDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States.ORCID 0000-0003-3187-1311
University of Pittsburgh · USUniversity of Wisconsin–Madison · USCarnegie Mellon University · US

Funding

New Tools to Decipher the Role of lncRNAs and Their Protein Interactomes in HematopoiesisR01HL149966 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H, SMITH, LLOYD M · 2020 to 2023
$1.7M
Discovering Extracellular Modulators of Lung Fibrogenesis by Profiling Newly Synthesized Extracellular MatrixR56HL158969 · NHLBI · CARNEGIE-MELLON UNIVERSITY · PI REN, XI · 2022 to 2022
$596k
NHLBI NIH HHS R01 HL149966NHLBI NIH HHS R56 HL158969
6 · The paper itself

Abstract

Despite recent technological advances such as ex vivo lung perfusion (EVLP), the outcome of lung transplantation remains unsatisfactory with ischemic injury being a common cause for primary graft dysfunction. New therapeutic developments are hampered by limited understanding of pathogenic mediators of ischemic injury to donor lung grafts. Here, to identify novel proteomic effectors underlying the development of lung graft dysfunction, using bioorthogonal protein engineering, we selectively captured and identified newly synthesized glycoproteins (NewS-glycoproteins) produced during EVLP with unprecedented temporal resolution of 4 h. Comparing the NewS-glycoproteomes in lungs with and without warm ischemic injury, we discovered highly specific proteomic signatures with altered synthesis in ischemic lungs, which exhibited close association to hypoxia response pathways. Inspired by the discovered protein signatures, pharmacological modulation of the calcineurin pathway during EVLP of ischemic lungs offered graft protection and improved posttransplantation outcome. In summary, the described EVLP-NewS-glycoproteomics strategy delivers an effective new means to reveal molecular mediators of donor lung pathophysiology and offers the potential to guide future therapeutic development.

Indexed as

Lung TransplantationReperfusion InjuryGlycoproteinsHumansLungPerfusionProteomicsWarm IschemiaGlycoproteinsclick chemistryex vivo lung perfusionproteomicswarm ischemic injury

Identifiers

PMID37130807
PMCPMC10292982
OpenAlexW4367670302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.