Evidence map›Paper›PMID 37130345›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2023

Leveraging natural language processing to augment structured social determinants of health data in the electronic health record.

Kevin Lybarger, Nicholas J Dobbins, Ritche Long, Angad Singh, Patrick Wedgeworth, Özlem Uzuner, Meliha Yetisgen

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 39 citations in OpenAlex.

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  10. Using reasoning LLMs to extract SDOH events from clinical notes.Proceedings. IEEE International Conference on Healthcare Informatics · 2026
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  13. Synth-SBDH: A Synthetic Dataset of Social and Behavioral Determinants of Health for Clinical Text.Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Kevin LybargerDepartment of Information Sciences and Technology, George Mason University, Fairfax, Virginia, USA.ORCID 0000-0001-5798-2664
Nicholas J DobbinsDepartment of Biomedical Informatics & Medical Education, University of Washington, Seattle, Washington, USA.ORCID 0000-0002-3598-8747
Ritche LongDepartment of Research IT, UW Medicine, University of Washington, Seattle, Washington, USA.
Angad SinghDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Patrick WedgeworthDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Özlem UzunerDepartment of Information Sciences and Technology, George Mason University, Fairfax, Virginia, USA.ORCID 0000-0001-8011-9850
Meliha YetisgenDepartment of Biomedical Informatics & Medical Education, University of Washington, Seattle, Washington, USA.
University of Washington · USGeorge Mason University · USUniversity of Washington Medical Center · US

Funding

Transform Dissemination and Implementation Science in CTSA ProgramsUL1TR002319 · NCATS · UNIVERSITY OF WASHINGTON · PI John K. Amory · 2017 to 2026
$100.0M
University of Washington Biomedical Informatics and Data Science Research Training ProgramT15LM007442 · NLM · UNIVERSITY OF WASHINGTON · PI JOHN H. GENNARI, Andrea L. Hartzler · 2002 to 2026
$19.6M
Extraction of Symptom Burden from Clinical Narratives of Cancer Patients using Natural Language ProcessingR21CA258242 · NCI · UNIVERSITY OF WASHINGTON · PI YETISGEN, MELIHA · 2021 to 2022
$719k
NCATS NIH HHS UL1 TR002319NCI NIH HHS R21 CA258242NLM NIH HHS T15 LM007442
6 · The paper itself

Abstract

objectiveSocial determinants of health (SDOH) impact health outcomes and are documented in the electronic health record (EHR) through structured data and unstructured clinical notes. However, clinical notes often contain more comprehensive SDOH information, detailing aspects such as status, severity, and temporality. This work has two primary objectives: (1) develop a natural language processing information extraction model to capture detailed SDOH information and (2) evaluate the information gain achieved by applying the SDOH extractor to clinical narratives and combining the extracted representations with existing structured data. MATERIALS AND

methodsWe developed a novel SDOH extractor using a deep learning entity and relation extraction architecture to characterize SDOH across various dimensions. In an EHR case study, we applied the SDOH extractor to a large clinical data set with 225 089 patients and 430 406 notes with social history sections and compared the extracted SDOH information with existing structured data.

resultsThe SDOH extractor achieved 0.86 F1 on a withheld test set. In the EHR case study, we found extracted SDOH information complements existing structured data with 32% of homeless patients, 19% of current tobacco users, and 10% of drug users only having these health risk factors documented in the clinical narrative.

conclusionsUtilizing EHR data to identify SDOH health risk factors and social needs may improve patient care and outcomes. Semantic representations of text-encoded SDOH information can augment existing structured data, and this more comprehensive SDOH representation can assist health systems in identifying and addressing these social needs.

Indexed as

Electronic Health RecordsSocial Determinants of HealthHumansInformation Storage and RetrievalNatural Language ProcessingRisk Factorsdata miningelectronic health recordsmachine learningnatural language processingsocial determinants of health

Identifiers

PMID37130345
PMCPMC10354760
OpenAlexW4367692366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.