Evidence map›Paper›PMID 37129944›Full record

ArticleJMIR formative research2023

Revealing the Roles of Part-of-Speech Taggers in Alzheimer Disease Detection: Scientific Discovery Using One-Intervention Causal Explanation.

Bingyang Wen, Ning Wang, Koduvayur Subbalakshmi, Rajarathnam Chandramouli

Open access · goldAbstract read
In one paragraph

Article in JMIR formative research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 2 pooled it
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 syntheses or guidelines pooled it, 8 citations in OpenAlex.

  1. Pooled it
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  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Bingyang WenDepartment of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, NJ, United States.ORCID https://orcid.org/0000-0002-8178-2045
Ning WangDepartment of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, NJ, United States.ORCID https://orcid.org/0000-0003-3546-0966
Koduvayur SubbalakshmiDepartment of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, NJ, United States.ORCID https://orcid.org/0000-0002-1670-9378
Rajarathnam ChandramouliGalois, Inc, Arlington, VA, United States.ORCID https://orcid.org/0000-0001-7889-740X
Stevens Institute of Technology · USGalois (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecently, rich computational methods that use deep learning or machine learning have been developed using linguistic biomarkers for the diagnosis of early-stage Alzheimer disease (AD). Moreover, some qualitative and quantitative studies have indicated that certain part-of-speech (PoS) features or tags could be good indicators of AD. However, there has not been a systematic attempt to discover the underlying relationships between PoS features and AD. Moreover, there has not been any attempt to quantify the relative importance of PoS features in detecting AD.

objectiveOur goal was to disclose the underlying relationship between PoS features and AD, understand whether PoS features are useful in AD diagnosis, and explore which PoS features play a vital role in the diagnosis.

methodsThe DementiaBank, containing 1049 transcripts from 208 patients with AD and 243 transcripts from 104 older control individuals, was used. A total of 27 PoS features were extracted from each record. Then, the relationship between AD and each of the PoS features was explored. A transformer-based deep learning model for AD prediction using PoS features was trained. Then, a global explainable artificial intelligence method was proposed and used to discover which PoS features were the most important in AD diagnosis using the transformer-based predictor. A global (model-level) feature importance measure was derived as a summary from the local (example-level) feature importance metric, which was obtained using the proposed causally aware counterfactual explanation method. The unique feature of this method is that it considers causal relations among PoS features and can, hence, preclude counterfactuals that are improbable and result in more reliable explanations.

resultsThe deep learning-based AD predictor achieved an accuracy of 92.2% and an F

conclusionsThe high classification accuracy of the proposed deep learner indicates that PoS features are strong clues in AD diagnosis. There are 12 PoS features that are strongly tied to AD, and because language is a noninvasive and potentially cheap method for detecting AD, this work shows some promising directions in this field.

Indexed as

Alzheimer diseasecausal inferenceexplainable machine learningnatural language processing

Identifiers

PMID37129944
PMCPMC10189619
OpenAlexW4312771523

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.