Evidence map›Paper›PMID 37129724›Full record

ReviewJournal of assisted reproduction and genetics2023

The origin and possible mechanism of embryonic cell-free DNA release in spent embryo culture media: a review.

Nining Handayani, Daniel Aubry, Arief Boediono, Budi Wiweko, Batara Sirait, Ivan Sini, Arie A Polim, Astari Dwiranti, Anom Bowolaksono

Open access · greenAbstract readReview
In one paragraph

Review in Journal of assisted reproduction and genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Nining HandayaniDoctoral Program in Biomedical Sciences, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia.ORCID http://orcid.org/0000-0001-8123-1203
Daniel AubryIndonesia International Institute for Life Sciences, Jakarta, Indonesia.ORCID http://orcid.org/0009-0002-8091-3397
Arief BoedionoIRSI Research and Training Centre, Jakarta, Indonesia.ORCID http://orcid.org/0000-0003-1535-703X
Budi WiwekoFaculty of Medicine, Division of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Universitas Indonesia, Jakarta, Indonesia.ORCID http://orcid.org/0000-0002-5898-7034
Batara SiraitIRSI Research and Training Centre, Jakarta, Indonesia.ORCID http://orcid.org/0000-0001-9073-809X
Ivan SiniIRSI Research and Training Centre, Jakarta, Indonesia.ORCID http://orcid.org/0000-0002-5364-0381
Arie A PolimIRSI Research and Training Centre, Jakarta, Indonesia.ORCID http://orcid.org/0000-0001-5876-4968
Astari DwirantiCellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group, Faculty of Mathematics and Natural Sciences, Department of Biology, Universitas Indonesia, Kampus FMIPA, Depok, UI, 16424, Indonesia.ORCID http://orcid.org/0000-0002-0105-2748
Anom BowolaksonoCellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group, Faculty of Mathematics and Natural Sciences, Department of Biology, Universitas Indonesia, Kampus FMIPA, Depok, UI, 16424, Indonesia. alaksono@sci.ui.ac.id.ORCID http://orcid.org/0000-0003-3180-1460
University of Indonesia · IDAtma Jaya Catholic University of Indonesia · IDIndonesia International Institute for Life Sciences · IDIPB University · IDUniversitas Kristen Indonesia · ID

Funding

Universitas Indonesia NKB-1293/UN2.RST/HKP.05.00/2022
6 · The paper itself

Abstract

The presence of cell-free DNA in spent embryo culture media (SECM) has unveiled its possible utilization for embryonic ploidy determination, opening new frontiers for the development of a non-invasive pre-implantation genetic screening technique. While a growing number of studies have shown a high concordance between genetic screening using cell-free DNA (cfDNA) and trophectoderm (TE), the mechanism pertaining to the release of cfDNA in SECM is largely unknown. This review aims to evaluate research evidence on the origin and possible mechanisms for the liberations of embryonic DNA in SECM, including findings on the self-correction abilities of embryos which might contribute to the presence of cfDNA. Several databases including EMBASE, PUBMED, and SCOPUS were used to retrieve original articles, reviews, and opinion papers. The keywords used for the search were related to the origins and release mechanism of cfDNA. cfDNA in SECM originates from embryonic cells and, at some levels, non-embryonic cells such as maternal DNA and exogenous foreign DNA. The apoptotic pathway has been demonstrated to eliminate aneuploid cells in developing mosaic embryos which might culminate to the release of cfDNA in SECM. Nonetheless, there is a recognized need for exploring other pathways such as cross-talk molecules called extracellular vesicles (EVs) made of small, round bi-layer membranes. During in vitro development, embryos physiologically and actively expel EVs containing not only protein and microRNA but also embryonic DNA, hence, potentially releasing cfDNA of embryonic origin into SECM through EVs.

Indexed as

Cell-Free Nucleic AcidsPreimplantation DiagnosisAneuploidyBlastocystCulture MediaDNAEmbryo Culture TechniquesEmbryo ImplantationFemaleHumansPregnancyCell-Free Nucleic AcidsCulture MediaDNAApoptosisCell-free DNAIn vitro fertilizationniPGT-ASpent embryo culture media

Identifiers

PMID37129724
PMCPMC10310623
OpenAlexW4367668945

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.