Evidence map›Paper›PMID 37129704›Full record

ArticleBiomolecular NMR assignments2023

Julian von Ehr, Sophie Marianne Korn, Lena Weiß, Andreas Schlundt

Open access · hybridAbstract read
In one paragraph

Article in Biomolecular NMR assignments, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Julian von EhrInstitute for Molecular Biosciences and Biomolecular Resonance Center (BMRZ) of Goethe University Frankfurt, Max-von-Laue-Str. 7-9, 60438, Frankfurt am Main, Germany.ORCID 0000-0003-4535-661X
Sophie Marianne KornInstitute for Molecular Biosciences and Biomolecular Resonance Center (BMRZ) of Goethe University Frankfurt, Max-von-Laue-Str. 7-9, 60438, Frankfurt am Main, Germany.ORCID 0000-0003-3798-3277
Lena WeißInstitute for Molecular Biosciences and Biomolecular Resonance Center (BMRZ) of Goethe University Frankfurt, Max-von-Laue-Str. 7-9, 60438, Frankfurt am Main, Germany.
Andreas SchlundtInstitute for Molecular Biosciences and Biomolecular Resonance Center (BMRZ) of Goethe University Frankfurt, Max-von-Laue-Str. 7-9, 60438, Frankfurt am Main, Germany. schlundt@bio.uni-frankfurt.de.ORCID 0000-0003-2254-7560
Goethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The family of AT-rich interactive domain (ARID) containing proteins -Arids- contains 15 members that have almost exclusively been described as DNA-binding proteins. Interestingly, a decade ago the family member Arid5a was found to bind and stabilize mRNAs of immune system key players and thereby account for driving inflammatory and autoimmune diseases. How exactly binding to DNA and RNA is coordinated by the Arid5a ARID domain remains unknown, mainly due to the lack of atom-resolved information on nucleic acid-binding. This in particular applies to the protein's ARID domain, despite the comfortable size of its core unit for NMR-based investigations. Furthermore, the core domain of ARID domains is found to be extended by functionally relevant, often flexible stretches, but whether such elongations are present and crucial for the versatile Arid5a functions is unknown. We here provide a near-complete NMR backbone resonance assignment of the Arid5a ARID domain with N- and C-terminal extensions, which serves as a basis for further studies of its nucleic acid-binding preferences and targeted inhibition by means of NMR. Our data thus significantly contribute to unravelling mechanisms of Arid5a-mediated gene regulation and diseases.

Indexed as

DNA-Binding ProteinsNucleic AcidsHumansMagnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularARID5A protein, humanDNA-Binding ProteinsNucleic AcidsARID domainAT-rich interactive domain containing proteinsHelix-turn-helix motifInflammatory diseasesNucleic acid-bindingTranscription regulation

Identifiers

PMID37129704
PMCPMC10232636
OpenAlexW4367668843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.