Evidence map›Paper›PMID 37129508›Full record

ReviewJournal of clinical microbiology2023

Species Delineation and Comparative Genomics within the

Joel J Maki, Mondraya Howard, Sara Connelly, Matthew A Pettengill, Dwight J Hardy, Andrew Cameron

Open access · hybridAbstract readReview
In one paragraph

Review in Journal of clinical microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Periodontitis in Patients With Severe Obesity: From the Oral and Gut Microbiota Dysregulation to the Visceral Adipose Tissue Inflammatory and Metabolic Disorders.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  2. Article
  3. Article
  4. In-depth Microbiological Characterization of Urine From Subjects With Type 2 Diabetes.The Journal of clinical endocrinology and metabolism · 2024
    Article
  5. Article
  6. Article
  7. Heritable Tissue-Specific Gene Expression Associates With Chronic Wound Microbial Species.Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joel J MakiDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, New York, USA.
Mondraya HowardDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, New York, USA.
Sara ConnellyDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, New York, USA.
Matthew A PettengillDepartment of Pathology, Anatomy, and Cell Biology, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.ORCID 0000-0002-4579-0187
Dwight J HardyDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, New York, USA.
Andrew CameronDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, New York, USA.ORCID 0000-0003-4038-921X
University of Rochester Medical Center · USThomas Jefferson University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Campylobacter ureolyticus is an emerging pathogen increasingly appreciated as a common cause of gastroenteritis and extra-intestinal infections in humans. Outside the setting of gastroenteritis, little work has been done to describe the genomic content and relatedness of the species, especially regarding clinical isolates. We reviewed the epidemiology of clinical C. ureolyticus cultured by our institution over the past 10 years. Fifty-one unique C. ureolyticus isolates were identified between January 2010 and August 2022, mostly originating from abscesses and blood cultures. To clarify the taxonomic relationships between isolates and to attribute specific genes with different clinical manifestations, we sequenced 19 available isolates from a variety of clinical specimen types and conducted a pangenomic analysis with publicly available C. ureolyticus genomes. Digital DNA:DNA hybridization suggested that these C. ureolyticus comprised a species complex of 10 species clusters (SCs) and several subspecies clusters. Although some orthologous genes or gene functions were enriched in isolates found in different SCs and clinical specimens, no association was significant. Nearly a third of the isolates possessed antimicrobial resistance genes, including the

Indexed as

CampylobacterCampylobacter InfectionsCampylobacter jejuniGastroenteritisAnti-Bacterial AgentsDNAGenomicsHumansAnti-Bacterial AgentsDNAanaerobebreast abscessCampylobacterCampylobacter ureolyticusmacrolidemacrolidespangenomewhole-genome sequencing

Identifiers

PMID37129508
PMCPMC10204631
OpenAlexW4367294026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.