Evidence map›Paper›PMID 37127628›Full record

ArticleMicrobial cell factories2023

Molecular mechanism of engineered Zymomonas mobilis to furfural and acetic acid stress.

Samina Shabbir, Weiting Wang, Mohsin Nawaz, Prerona Boruah, Muhammad Fakhar-E-Alam Kulyar, Mao Chen, Bo Wu, Panting Liu, Yonghua Dai, Lingling Sun and 5 more

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Samina ShabbirGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Weiting WangGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Mohsin NawazInstitute of Environment and Ecology, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China.
Prerona BoruahSchool of Biotechnology and Bioinformatics, DY PATIL Deemed to Be University, Navi Mumbai, India.
Muhammad Fakhar-E-Alam KulyarCollege of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
Mao ChenGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Bo WuBiomass Energy Technology Research Centre, Key Laboratory of Development and Application of Rural Renewable Energy (Ministry of Agriculture and Rural Affairs), Biogas Institute of Ministry of Agriculture and Rural Affairs, Section 4-13, Renmin Rd. South, Chengdu, 610041, People's Republic of China.
Panting LiuGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Yonghua DaiGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Lingling SunGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Qiyu GouGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Renbin LiuGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Guoquan HuGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China.
Tahira YounisDepartment of Biochemistry and Biotechnology, The Women University Multan, Multan, Pakistan.
Mingxiong HeGraduate School of Chinese Academy of Agricultural Science, Beijing, 100081, People's Republic of China. hemingxiong@caas.cn.
Biogas Institute of Ministry of Agriculture · CNMinistry of Agriculture and Rural Affairs · CNThe Women University Multan · PKD.Y. Patil University · INHuazhong Agricultural University · CNJiangsu University · CNNational Institute of Measurement and Testing Technology · CN

Funding

National Natural Sciences Foundation of China 32070036
6 · The paper itself

Abstract

Acetic acid and furfural (AF) are two major inhibitors of microorganisms during lignocellulosic ethanol production. In our previous study, we successfully engineered Zymomonas mobilis 532 (ZM532) strain by genome shuffling, but the molecular mechanisms of tolerance to inhibitors were still unknown. Therefore, this study investigated the responses of ZM532 and its wild-type Z. mobilis (ZM4) to AF using multi-omics approaches (transcriptomics, genomics, and label free quantitative proteomics). Based on RNA-Seq data, two differentially expressed genes, ZMO_RS02740 (up-regulated) and ZMO_RS06525 (down-regulated) were knocked out and over-expressed through CRISPR-Cas technology to investigate their roles in AF tolerance. Overall, we identified 1865 and 14 novel DEGs in ZM532 and wild-type ZM4. In contrast, 1532 proteins were identified in ZM532 and wild-type ZM4. Among these, we found 96 important genes in ZM532 involving acid resistance mechanisms and survival rates against stressors. Furthermore, our knockout results demonstrated that growth activity and glucose consumption of mutant strains ZM532∆ZMO_RS02740 and ZM4∆ZMO_RS02740 decreased with increased fermentation time from 42 to 55 h and ethanol production up to 58% in ZM532 than that in ZM532∆ZMO_RS02740. Hence, these findings suggest ZMO_RS02740 as a protective strategy for ZM ethanol production under stressful conditions.

Indexed as

Acetic AcidZymomonasDNA ShufflingEthanolFermentationFuraldehydeAcetic AcidEthanolFuraldehydeAcetic acidFurfuralLignocellulosic biomassProteomicsRNA-SeqZymomonas mobilis

Identifiers

PMID37127628
PMCPMC10152622
OpenAlexW4367669232

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.