Evidence map›Paper›PMID 37127579›Full record

ArticleVirology journal2023

Isolation and characterization of a novel phage belonging to a new genus against Vibrio parahaemolyticus.

Yubing Chen, Wenqing Li, Keming Shi, Zheng Fang, Yunlan Yang, Rui Zhang

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  3. Viruses · 2026
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  5. Enhanced control of pathogenicApplied and environmental microbiology · 2025
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  15. Article
  16. Article
  17. Isolation and Characterization of a Novel Phage againstInternational journal of molecular sciences · 2024
    Article
  18. Article
  19. Characterization of a Vibriophage Infecting PathogenicInternational journal of molecular sciences · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Yubing ChenState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, Fujian, China.
Wenqing LiState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, Fujian, China.
Keming ShiState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, Fujian, China.
Zheng FangChina-ASEAN College of Marine Sciences, Xiamen University Malaysia, Sepang, 43900, Selangor, Malaysia.
Yunlan YangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, Fujian, China. yangyunlan@xmu.edu.cn.
Rui ZhangInstitute for Advanced Study, Shenzhen University, Shenzhen, 518061, Guangdong, China. ruizhang@szu.edu.cn.
Xiamen University · CNXiamen University Malaysia · MYShenzhen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVibrio parahaemolyticus is a major foodborne pathogen that contaminates aquatic products and causes great economic losses to aquaculture. Because of the emergence of multidrug-resistant V. parahaemolyticus strains, bacteriophages are considered promising agents for their biocontrol as an alternative or supplement to antibiotics. In this study, a lytic vibriophage, vB_VpaM_R16F (R16F), infecting V. parahaemolyticus 1.1997

methodsA vibriophage R16F was isolated from sewage from a seafood market with the double-layer agar method. R16F was studied by transmission electron microscopy, host range, sensitivity of phage particles to chloroform, one-step growth curve and lytic activity. The phage genome was sequenced and in-depth characterized, including phylogenetic and taxonomic analysis.

resultsR16F belongs to the myovirus morphotype and infects V. parahaemolyticus, but not nine other Vibrio spp. As characterized by determining its host range, one-step growth curve, and lytic activity, phage R16F was found to highly effective in lysing host cells with a short latent period (< 10 min) and a small burst size (13 plaque-forming units). R16F has a linear double-stranded DNA with genome size 139,011 bp and a G + C content of 35.21%. Phylogenetic and intergenomic nucleotide sequence similarity analysis revealed that R16F is distinct from currently known vibriophages and belongs to a novel genus. Several genes (e.g., encoding ultraviolet damage endonuclease and endolysin) that may enhance environmental competitiveness were found in the genome of R16F, while no antibiotic resistance- or virulence factor-related gene was detected.

conclusionsIn consideration of its biological and genetic properties, this newly discovered phage R16F belongs to a novel genus and may be a potential alternate biocontrol agent.

Indexed as

BacteriophagesVibrio parahaemolyticusGenome, ViralHost SpecificityPhylogenyBiological featuresGenomic analysisPhage therapyVibrio parahaemolyticusVibriophage

Identifiers

PMID37127579
PMCPMC10152775
OpenAlexW4367624084

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.