Evidence map›Paper›PMID 37126401›Full record

ArticleMolecular biology of the cell2023

Loops and the activity of loop extrusion factors constrain chromatin dynamics.

Mary Lou P Bailey, Ivan Surovtsev, Jessica F Williams, Hao Yan, Tianyu Yuan, Kevin Li, Katherine Duseau, Simon G J Mochrie, Megan C King

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  6. Transcriptional machinery as an architect of genome structure.Current opinion in structural biology · 2024
    Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mary Lou P BaileyDepartment of Applied Physics, Yale University, New Haven, CT 06511.
Ivan SurovtsevDepartment of Physics, Yale University, New Haven, CT 06511.
Jessica F WilliamsDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.
Hao YanIntegrated Graduate Program in Physics Engineering Biology, Yale University, New Haven, CT 06511.
Tianyu YuanIntegrated Graduate Program in Physics Engineering Biology, Yale University, New Haven, CT 06511.
Kevin LiDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.
Katherine DuseauDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.
Simon G J MochrieDepartment of Applied Physics, Yale University, New Haven, CT 06511.
Megan C KingIntegrated Graduate Program in Physics Engineering Biology, Yale University, New Haven, CT 06511.ORCID 0000-0002-1688-2226
Yale University · US

Funding

Convergent Graduate Training in Engineering, Physics and BiologyT32EB019941 · NIBIB · YALE UNIVERSITY · PI O'HERN, COREY · 2016 to 2020
$998k
NIBIB NIH HHS T32 EB019941
6 · The paper itself

Abstract

The chromosomes-DNA polymers and their binding proteins-are compacted into a spatially organized, yet dynamic, three-dimensional structure. Recent genome-wide chromatin conformation capture experiments reveal a hierarchical organization of the DNA structure that is imposed, at least in part, by looping interactions arising from the activity of loop extrusion factors. The dynamics of chromatin reflects the response of the polymer to a combination of thermal fluctuations and active processes. However, how chromosome structure and enzymes acting on chromatin together define its dynamics remains poorly understood. To gain insight into the structure-dynamics relationship of chromatin, we combine high-precision microscopy in living

Indexed as

ChromatinChromosomesCell Cycle ProteinsDNAGenomePolymersCell Cycle ProteinsChromatinDNAPolymers

Identifiers

PMID37126401
PMCPMC10398873
OpenAlexW4367049107

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.