Evidence map›Paper›PMID 37125926›Full record

ArticleMicrobiology spectrum2023

Antibiotic-Resistant Vibrio cholerae O1 and Its SXT Elements Associated with Two Cholera Epidemics in Kenya in 2007 to 2010 and 2015 to 2016.

Mohammad Monir Shah, Martin Bundi, Cyrus Kathiiko, Sora Guyo, Amina Galata, Gabriel Miringu, Yoshio Ichinose, Lay-Myint Yoshida

Abstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Iranian journal of pathology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Wastewater and environmental surveillance forJournal of water and health · 2025
    Article
  9. Article
  10. Article
  11. Genomic characterization ofFrontiers in microbiology · 2025
    Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mohammad Monir ShahDepartment of Pediatric Infectious Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.ORCID 0000-0002-4598-0212
Martin BundiNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Cyrus KathiikoNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Sora GuyoNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Amina GalataNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Gabriel MiringuNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Yoshio IchinoseNagasaki University Institute of Tropical Medicine-Kenya Medical Research Institute Project, Nairobi, Kenya.
Lay-Myint YoshidaDepartment of Pediatric Infectious Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multidrug-resistant Vibrio cholerae O1 strains have long been observed in Africa, and strains exhibiting new resistance phenotypes have emerged during recent epidemics in Kenya. This study aimed to determine the epidemiological aspects, drug resistance patterns, and genetic elements of V. cholerae O1 strains isolated from two cholera epidemics in Kenya between 2007 and 2010 and between 2015 and 2016. A total of 228 V. cholerae O1 strains, including 226 clinical strains isolated from 13 counties in Kenya during the 2007-2010 and 2015-2016 cholera epidemics and two environmental isolates (from shallow well water and spring water isolates) isolated from Pokot and Kwale Counties, respectively, in 2010 were subjected to biotyping, serotyping, and antimicrobial susceptibility testing, including the detection of antibiotic resistance genes and mobile genetic elements. All V. cholerae isolates were identified as El Tor biotypes and susceptible to ceftriaxone, gentamicin, and ciprofloxacin. The majority of isolates were resistant to trimethoprim-sulfamethoxazole (94.6%), streptomycin (92.8%), and nalidixic acid (64.5%), while lower resistance was observed against ampicillin (3.6%), amoxicillin (4.2%), chloramphenicol (3.0%), and doxycycline (1.8%). Concurrently, the integrating conjugative (SXT) element was found in 95.5% of the V. cholerae isolates; conversely, class 1, 2, and 3 integrons were absent. Additionally, 64.5% of the isolates exhibited multidrug resistance patterns. Antibiotic-resistant gene clusters suggest that environmental bacteria may act as cassette reservoirs that favor resistant pathogens. On the other hand, the 2015-2016 epidemic strains were found susceptible to most antibiotics except nalidixic acid. This revealed the replacement of multidrug-resistant strains exhibiting new resistance phenotypes that emerged after Kenya's 2007-2010 epidemic.

Indexed as

CholeraEpidemicsVibrio cholerae O1Anti-Bacterial AgentsDisease OutbreaksHumansKenyaNalidixic AcidAnti-Bacterial AgentsNalidixic Acidantibiotic-resistant mechanismscholera epidemicmultidrug-resistant strainV. cholerae O1

Identifiers

PMID37125926
PMCPMC10269778

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.