Evidence map›Paper›PMID 37123247›Full record

ArticleiScience2023

A five-safes approach to a secure and scalable genomics data repository.

Chih Chuan Shih, Jieqi Chen, Ai Shan Lee, Nicolas Bertin, Maxime Hebrard, Chiea Chuen Khor, Zheng Li, Joanna Hui Juan Tan, Wee Yang Meah, Su Qin Peh and 28 more

Abstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. Integrative Genomic Analyses IdentifybioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. The Causal Effect of Adult Height on Late-Life Handgrip Strength: The Singapore Chinese Health Study.The journals of gerontology. Series A, Biological sciences and medical sciences · 2024
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Chih Chuan ShihGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Jieqi ChenGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Ai Shan LeeGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Nicolas BertinGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Maxime HebrardGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Chiea Chuen KhorGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Zheng LiGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Joanna Hui Juan TanGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Wee Yang MeahGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Su Qin PehGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Shi Qi MokGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Kar Seng SimGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Jianjun LiuGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Ling WangGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Eleanor WongGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Jingmei LiGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Aung TinSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
Ching-Yu ChengSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
Chew-Kiat HengDepartment of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
Jian-Min YuanDepartment of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.
Woon-Puay KohHealthy Longevity Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
Seang Mei SawSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
Yechiel FriedlanderBraun School of Public Health, Hebrew University of Jerusalem, Jerusalem, Israel.
Xueling SimSaw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
Jin Fang ChaiSaw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
Yap Seng ChongYong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
Sonia DavilaSingHealth Duke-NUS Institute of Precision Medicine, Singapore, Republic of Singapore.
Liuh Ling GohMolecular Diagnostic Laboratory, Tan Tock Seng Hospital, Singapore, Republic of Singapore.
Eng Sing LeeClinical Research Unit, National Healthcare Group Polyclinics, Singapore, Republic of Singapore.
Tien Yin WongSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
Neerja KarnaniSingapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore.
Khai Pang LeongPersonalised Medicine Service, Tan Tock Seng Hospital, Singapore, Republic of Singapore.
Khung Keong YeoDuke-NUS Medical School, Singapore, Republic of Singapore.
John C ChambersPrecision Health Research, Singapore, Republic of Singapore.
Su Chi LimSaw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
Rick Siow Mong GohInstitute of High Performance Computing (IHPC), Agency for Science, Technology and Research (A∗STAR), 1 Fusionopolis Way, #16-16 Connexis (North Tower), Singapore 138632, Republic of Singapore.
Patrick TanGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
Rajkumar DorajooGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.

Funding

Prospective studies of cancer etiology and prevention in Shanghai and SingaporeR01CA144034 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YUAN, JIAN-MIN · 2010 to 2014
$7.0M
THE SINGAPORE COHORT STUDY OF DIET AND CANCERR01CA080205 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI YUAN, JIAN-MIN · 1999 to 2009
$5.3M
Cancer epidemiology cohorts in Shanghai and Singapore UM1CA182876 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YUAN, JIAN-MIN · 2014 to 2018
$4.3M
Maternal Obesity, Fetal Genomics, and Atherosclerotic Metabolic RiskR01HL088884 · NHLBI · UNIVERSITY OF WASHINGTON · PI SISCOVICK, DAVID STUART · 2006 to 2009
$1.7M
NCI NIH HHS R01 CA080205NCI NIH HHS R01 CA144034NCI NIH HHS UM1 CA182876NHLBI NIH HHS R01 HL088884
6 · The paper itself

Abstract

Genomic researchers increasingly utilize commercial cloud service providers (CSPs) to manage data and analytics needs. CSPs allow researchers to grow Information Technology (IT) infrastructure on demand to overcome bottlenecks when combining large datasets. However, without adequate security controls, the risk of unauthorized access may be higher for data stored on the cloud. Additionally, regulators are mandating data access patterns and specific security protocols for the storage and use of genomic data. While CSP provides tools for security and regulatory compliance, building the necessary controls required for cloud solutions is not trivial. Research Assets Provisioning and Tracking Online Repository (RAPTOR) by the Genome Institute of Singapore is a cloud-native genomics data repository and analytics platform that implements a "five-safes" framework to provide security and governance controls to data contributors and users, leveraging CSP for sharing and analysis of genomic datasets without the risk of security breaches or running afoul of regulations.

Indexed as

Data encryptionData storage representationGenomics

Identifiers

PMID37123247
PMCPMC10139958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.