Evidence map›Paper›PMID 37121972›Full record

ArticleExperimental & molecular medicine2023

Clinical molecular subtyping reveals intrinsic mesenchymal reprogramming in gastric cancer cells.

Eunji Jang, Min-Kyue Shin, Hyunki Kim, Joo Yeon Lim, Jae Eun Lee, Jungmin Park, Jungeun Kim, Hyeseon Kim, Youngmin Shin, Hye-Young Son and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Eunji Jang *MediBio-Informatics Research Center, Novomics Co., Ltd., Seoul, Republic of Korea.
Min-Kyue Shin *College of Medicine, Yonsei University, Seoul, Republic of Korea.
Hyunki KimDepartment of Pathology, Yonsei University, Seoul, Republic of Korea.
Joo Yeon LimDepartment of Surgery, Yonsei University, Seoul, Republic of Korea.
Jae Eun LeeDepartment of Surgery, Yonsei University, Seoul, Republic of Korea.
Jungmin ParkDepartment of Radiology, Yonsei University, Seoul, Republic of Korea.
Jungeun KimMediBio-Informatics Research Center, Novomics Co., Ltd., Seoul, Republic of Korea.
Hyeseon KimMediBio-Informatics Research Center, Novomics Co., Ltd., Seoul, Republic of Korea.
Youngmin ShinDepartment of Radiology, Yonsei University, Seoul, Republic of Korea.
Hye-Young SonDepartment of Radiology, Yonsei University, Seoul, Republic of Korea.
Yoon Young ChoiDepartment of Surgery, Yonsei University, Seoul, Republic of Korea.
Woo Jin HyungDepartment of Surgery, Yonsei University, Seoul, Republic of Korea.
Sung Hoon NohDepartment of Surgery, Yonsei University, Seoul, Republic of Korea.
Jin-Suck SuhDepartment of Radiology, Yonsei University, Seoul, Republic of Korea.
Ji-Yong SungDepartment of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Korea.ORCID http://orcid.org/0000-0002-8397-1691
Yong-Min HuhCollege of Medicine, Yonsei University, Seoul, Republic of Korea. ymhuh@yuhs.ac.
Jae-Ho CheongCollege of Medicine, Yonsei University, Seoul, Republic of Korea. jhcheong@yuhs.ac.ORCID http://orcid.org/0000-0002-1703-1781

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mesenchymal cancer phenotype is known to be clinically related to treatment resistance and a poor prognosis. We identified gene signature-based molecular subtypes of gastric cancer (GC, n = 547) based on transcriptome data and validated their prognostic and predictive utility in multiple external cohorts. We subsequently examined their associations with tumor microenvironment (TME) features by employing cellular deconvolution methods and sequencing isolated GC populations. We further performed spatial transcriptomics analysis and immunohistochemistry, demonstrating the presence of GC cells in a partial epithelial-mesenchymal transition state. We performed network and pharmacogenomic database analyses to identify TGF-β signaling as a driver pathway and, thus, a therapeutic target. We further validated its expression in tumor cells in preclinical models and a single-cell dataset. Finally, we demonstrated that inhibition of TGF-β signaling negated mesenchymal/stem-like behavior and therapy resistance in GC cell lines and mouse xenograft models. In summary, we show that the mesenchymal GC phenotype could be driven by epithelial cancer cell-intrinsic TGF-β signaling and propose therapeutic strategies based on targeting the tumor-intrinsic mesenchymal reprogramming of medically intractable GC.

Indexed as

Stomach NeoplasmsAnimalsCell Line, TumorDisease Models, AnimalEpithelial-Mesenchymal TransitionGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiceTranscriptomeTransforming Growth Factor betaTumor MicroenvironmentTransforming Growth Factor beta

Identifiers

PMID37121972
PMCPMC10238377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.