Evidence map›Paper›PMID 37118543›Full record

ArticleNature aging2022

Aging is associated with a systemic length-associated transcriptome imbalance.

Thomas Stoeger, Rogan A Grant, Alexandra C McQuattie-Pimentel, Kishore R Anekalla, Sophia S Liu, Heliodoro Tejedor-Navarro, Benjamin D Singer, Hiam Abdala-Valencia, Michael Schwake, Marie-Pier Tetreault and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Nature aging, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 108 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 3 countries.

Thomas StoegerDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA. thomas.stoeger@northwestern.edu.ORCID 0000-0002-5540-4278
Rogan A GrantDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Alexandra C McQuattie-PimentelDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.
Kishore R AnekallaDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.
Sophia S LiuDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.
Heliodoro Tejedor-NavarroNorthwestern Institute on Complex Systems, Northwestern University, Evanston, IL, USA.
Benjamin D SingerDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-5775-8427
Hiam Abdala-ValenciaDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.
Michael SchwakeDepartment of Neurology, Northwestern University, Evanston, IL, USA.
Marie-Pier TetreaultDivision of Gastroenterology and Hepatology, Northwestern University, Evanston, IL, USA.
Harris PerlmanDivision of Rheumatology, Northwestern University, Evanston, IL, USA.
William E BalchThe Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0003-0899-8381
Navdeep S ChandelDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-7208-3886
Karen M RidgeDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.
Jacob I SznajderDivision of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA.
Richard I Morimoto *Department of Molecular Biosciences, Northwestern University, Evanston, IL, USA. r-morimoto@northwestern.edu.
Alexander V Misharin *Division of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA. a-misharin@northwestern.edu.ORCID 0000-0003-2879-3789
G R Scott Budinger *Division of Pulmonary and Critical Care Medicine, Northwestern University, Evanston, IL, USA. s-buding@northwestern.edu.ORCID 0000-0002-3114-5208
Luis A Nunes Amaral *Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA. amaral@northwestern.edu.ORCID 0000-0002-3762-789X
Northwestern University · USScripps Research Institute · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Role of LUBAC and Na K-ATPase in Acute Lung InjuryP01HL071643 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHANDEL, NAVDEEP S · 2003 to 2019
$30.8M
Tissue resident macrophages regulate proteostasis in the aging lungP01AG049665 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Benjamin David Singer · 2015 to 2026
$26.9M
Technology CoreU19AI135964 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RICHARD G WUNDERINK · 2018 to 2026
$24.7M
The Cell Phenotyping and Mouse CoreP01HL154998 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KAREN M RIDGE · 2021 to 2026
$18.9M
The proteasome in aging and neurodegenerative diseaseP01AG054407 · NIA · NORTHWESTERN UNIVERSITY · PI FINKBEINER, STEVEN M · 2018 to 2022
$14.0M
Restoration of mutant CFTR stability and functionR01DK051870 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BALCH, WILLIAM EDWARD · 1996 to 2020
$8.7M
Role of altered response to volumetric distension in esophageal diseaseP01DK117824 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PANDOLFINO, JOHN E · 2018 to 2022
$7.3M
The injurious effects of hypercapnia on the alveolar epitheliumR01HL085534 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SZNAJDER, JACOB I · 2006 to 2018
$4.9M
Mechanisms of regulatory T cell-mediated recovery from severe viral pneumoniaR01HL149883 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Benjamin David Singer · 2020 to 2026
$4.1M
Role and Regulation of Sodium, Potasium ATPase in LungR37HL048129 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SZNAJDER, JACOB I · 2008 to 2017
$4.0M
C. elegans Model for Neurodegenerative Diseases of AgingR37AG026647 · NIA · NORTHWESTERN UNIVERSITY · PI MORIMOTO, RICHARD I · 2010 to 2019
$3.9M
BLRD VA I01 BX000201NCI NIH HHS P30 CA060553NHLBI NIH HHS K08 HL128867NHLBI NIH HHS P01 HL071643NHLBI NIH HHS P01 HL154998NHLBI NIH HHS R01 HL048129NHLBI NIH HHS R01 HL079190NHLBI NIH HHS R01 HL085534NHLBI NIH HHS R01 HL124664NHLBI NIH HHS R01 HL134375NHLBI NIH HHS R01 HL141810NHLBI NIH HHS R01 HL149883NHLBI NIH HHS R01 HL153122NHLBI NIH HHS R01 HL153312NHLBI NIH HHS R37 HL048129NHLBI NIH HHS R56 HL135124NIAID NIH HHS U19 AI135964NIAMS NIH HHS R01 AR064546NIAMS NIH HHS UH2 AR067687NIA NIH HHS F31 AG071225NIA NIH HHS K99 AG068544NIA NIH HHS P01 AG049665NIA NIH HHS P01 AG054407NIA NIH HHS R00 AG068544NIA NIH HHS R01 AG026647NIA NIH HHS R01 AG070209NIA NIH HHS R37 AG026647NIA NIH HHS R56 AG059579NIA NIH HHS RF1 AG057296NIDDK NIH HHS P01 DK117824NIDDK NIH HHS R01 DK051870NIDDK NIH HHS R01 DK116988NIEHS NIH HHS R01 ES013995
6 · The paper itself

Abstract

Aging is among the most important risk factors for morbidity and mortality. To contribute toward a molecular understanding of aging, we analyzed age-resolved transcriptomic data from multiple studies. Here, we show that transcript length alone explains most transcriptional changes observed with aging in mice and humans. We present three lines of evidence supporting the biological importance of the uncovered transcriptome imbalance. First, in vertebrates the length association primarily displays a lower relative abundance of long transcripts in aging. Second, eight antiaging interventions of the Interventions Testing Program of the National Institute on Aging can counter this length association. Third, we find that in humans and mice the genes with the longest transcripts enrich for genes reported to extend lifespan, whereas those with the shortest transcripts enrich for genes reported to shorten lifespan. Our study opens fundamental questions on aging and the organization of transcriptomes.

Indexed as

AgingTranscriptomeAnimalsGene Expression ProfilingHumansLongevityMiceRisk Factors

Identifiers

PMID37118543
PMCPMC10154227
OpenAlexW4312180699

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.