Evidence map›Paper›PMID 37118089›Full record

ArticleNature aging2022

Epigenetic reversal of hematopoietic stem cell aging in Phf6-knockout mice.

Agnieszka A Wendorff, S Aidan Quinn, Silvia Alvarez, Jessie A Brown, Mayukh Biswas, Thomas Gunning, Teresa Palomero, Adolfo A Ferrando

Open access · greenAbstract read
In one paragraph

Article in Nature aging, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Aging and immunity: the age-old tango.Genes & development · 2025
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. An NADNature aging · 2024
    Article
  15. Article
  16. PHF6 suppresses self-renewal of leukemic stem cells in AML.bioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Agnieszka A Wendorff *Institute for Cancer Genetics, Columbia University, New York, NY, USA. anyawff@calicolabs.com.ORCID http://orcid.org/0000-0002-4072-5271
S Aidan Quinn *Institute for Cancer Genetics, Columbia University, New York, NY, USA.
Silvia AlvarezInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Jessie A BrownInstitute for Cancer Genetics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-2396-5393
Mayukh BiswasInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Thomas GunningInstitute for Cancer Genetics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-8116-8136
Teresa PalomeroInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Adolfo A FerrandoInstitute for Cancer Genetics, Columbia University, New York, NY, USA. af2196@columbia.edu.ORCID http://orcid.org/0000-0002-6212-8574
Regeneron (United States) · USCancer Genetics (United States) · USColumbia University Irving Medical Center · USISCO International (United States) · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Molecular pathways and targeted therapies in human leukemiaR35CA210065 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FERRANDO, ADOLFO A. · 2017 to 2021
$4.7M
The role of PHF6 in the control of hematopoietic stem cell aging.R01AG077020 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PALOMERO, TERESA, RABADAN, RAUL · 2021 to 2025
$2.5M
Clonal dynamics and chemoresistance mechanisms of minimal residual disease in acute leukemiaK99CA267168 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BROWN, JESSIE ANN · 2022 to 2022
$136k
NCI NIH HHS K99 CA267168NCI NIH HHS P30 CA013696NCI NIH HHS R35 CA210065NIA NIH HHS R01 AG077020U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA206501U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute (National Cancer Institute Division of Cancer Epidemiology and Genetics) CA267168
6 · The paper itself

Abstract

Aging is characterized by an accumulation of myeloid-biased hematopoietic stem cells (HSCs) with reduced developmental potential. Genotoxic stress and epigenetic alterations have been proposed to mediate age-related HSC loss of regenerative and self-renewal potential. However, the mechanisms underlying these changes remain largely unknown. Genetic inactivation of the plant homeodomain 6 (Phf6) gene, a nucleolar and chromatin-associated factor, antagonizes age-associated HSC decline. Immunophenotyping, single-cell transcriptomic analyses and transplantation assays demonstrated markedly decreased accumulation of immunophenotypically defined HSCs, reduced myeloid bias and increased hematopoietic reconstitution capacity with preservation of lymphoid differentiation potential in Phf6-knockout HSCs from old mice. Moreover, deletion of Phf6 in aged mice rejuvenated immunophenotypic, transcriptional and functional hallmarks of aged HSCs. Long-term HSCs from old Phf6-knockout mice showed epigenetic rewiring and transcriptional programs consistent with decreased genotoxic stress-induced HSC aging. These results identify Phf6 as an important epigenetic regulator of HSC aging.

Indexed as

AgingHematopoietic Stem CellsAnimalsCell DifferentiationEpigenesis, GeneticMiceMice, KnockoutRepressor ProteinsPhf6 protein, mouseRepressor Proteins

Identifiers

PMID37118089
PMCPMC12077290
OpenAlexW4309564620

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.