Evidence map›Paper›PMID 37117217›Full record

ArticleNature communications2023

A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China.

Kai Zhou, Chun-Xu Xue, Tingting Xu, Ping Shen, Sha Wei, Kelly L Wyres, Margaret M C Lam, Jinquan Liu, Haoyun Lin, Yunbo Chen and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. RecCVirulence · 2026
    Article
  6. Emergence ofVirulence · 2026
    Article
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  15. Article
  16. Review
  17. Shifting of blaBMC genomics · 2026
    Article
  18. A One Health Perspective onMicroorganisms · 2026
    Review
  19. Article
  20. Multicenter Surveillance ofInfection and drug resistance · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 20 institutions in 4 countries.

Kai Zhou *Shenzhen Institute of Respiratory Diseases, Shenzhen People's Hospital (Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, 518020, China. zhouk@mail.sustech.edu.cn.
Chun-Xu Xue *Shenzhen Institute of Respiratory Diseases, Shenzhen People's Hospital (Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, 518020, China.ORCID 0000-0003-4553-4527
Tingting Xu *Shenzhen Institute of Respiratory Diseases, Shenzhen People's Hospital (Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, 518020, China.ORCID 0000-0002-2913-2133
Ping Shen *State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310003, China.ORCID 0000-0003-4677-6747
Sha WeiShenzhen Institute of Respiratory Diseases, Shenzhen People's Hospital (Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, 518020, China.ORCID 0009-0002-5417-6709
Kelly L WyresDepartment of Infectious Diseases, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia.ORCID 0000-0002-4033-6639
Margaret M C LamDepartment of Infectious Diseases, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia.
Jinquan LiuShenzhen Institute of Respiratory Diseases, Shenzhen People's Hospital (Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, 518020, China.ORCID 0009-0001-7311-0644
Haoyun LinDepartment of Clinical Laboratory, Shenzhen People's Hospital, Shenzhen, China.ORCID 0000-0002-9212-4048
Yunbo ChenState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310003, China.ORCID 0000-0002-5843-1386
Kathryn E HoltDepartment of Infectious Diseases, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia.
BRICS Working Group
Yonghong XiaoState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310003, China. xiaoyonghong@zju.edu.cn.
Shanxi Medical University · CNJinan University · CNNational Clinical Research Center for Digestive Diseases · CNAnhui Medical University · CNShenZhen People’s Hospital · CNAffiliated Hospital of Jining Medical University · CNBinzhou Medical University · CNFirst Affiliated Hospital of Gannan Medical University · CNGeneral Hospital of Shenyang Military Region · CNHenan University Huaihe Hospital and Huaihe Clinical Institute · CNHuangshan University · CNJiujiang First People's Hospital · CNMonash University · AUMudanjiang Medical University · CNNorthwest Women's and Children's Hospital · CNSecond People's Hospital of Yunnan Province · CNTengzhou Central People's Hospital · CNWannan Medical College · CNWuhan Puai Hospital · CNXinjiang Uygur Autonomous Region Uygur Medicine Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adaptation to selective pressures is crucial for clinically important pathogens to establish epidemics, but the underlying evolutionary drivers remain poorly understood. The current epidemic of carbapenem-resistant Klebsiella pneumoniae (CRKP) poses a significant threat to public health. In this study we analyzed the genome sequences of 794 CRKP bloodstream isolates collected in 40 hospitals in China between 2014 and 2019. We uncovered a subclonal replacement in the predominant clone ST11, where the previously prevalent subclone OL101:KL47 was replaced by O2v1:KL64 over time in a stepwise manner. O2v1:KL64 carried a higher load of mobile genetic elements, and a point mutation exclusively detected in the recC of O2v1:KL64 significantly promotes recombination proficiency. The epidemic success of O2v1:KL64 was further associated with a hypervirulent sublineage with enhanced resistance to phagocytosis, sulfamethoxazole-trimethoprim, and tetracycline. The phenotypic alterations were linked to the overrepresentation of hypervirulence determinants and antibiotic genes conferred by the acquisition of an rmpA-positive pLVPK-like virulence plasmid and an IncFII-type multidrug-resistant plasmid, respectively. The dissemination of the sublineage was further promoted by more frequent inter-hospital transmission. The results collectively demonstrate that the expansion of O2v1:KL64 is correlated to a repertoire of genomic alterations convergent in a subpopulation with evolutionary advantages.

Indexed as

Carbapenem-Resistant EnterobacteriaceaeKlebsiella InfectionsAnti-Bacterial Agentsbeta-LactamasesCarbapenemsChinaHumansKlebsiella pneumoniaePoint MutationAnti-Bacterial Agentsbeta-LactamasesCarbapenems

Identifiers

PMID37117217
PMCPMC10147710
OpenAlexW4367309701

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.