Evidence map›Paper›PMID 37117181›Full record

ArticleNature communications2023

The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner.

Adriana Gonzalez-Sandoval, Katja Pekrun, Shinnosuke Tsuji, Feijie Zhang, King L Hung, Howard Y Chang, Mark A Kay

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
18.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 58 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Tissue-specific gene delivery approaches.Bioengineering & translational medicine · 2026
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Developing a minimally invasive gene therapy for multiple sclerosis.Molecular therapy. Methods & clinical development · 2025
    Article
  16. Nonclinical strategies and considerations to enable the redosing of gene therapies.Molecular therapy. Methods & clinical development · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Identification of a robust promoter in mouse and human hepatocytes by in vivo biopanning of a barcoded AAV library.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Adriana Gonzalez-Sandoval *Department of Pediatrics, Stanford University, Stanford, CA, USA.
Katja Pekrun *Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0001-8346-1889
Shinnosuke Tsuji *Department of Pediatrics, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1929-4956
Feijie ZhangDepartment of Pediatrics, Stanford University, Stanford, CA, USA.
King L HungDepartment of Dermatology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-3662-4662
Howard Y ChangDepartment of Dermatology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-9459-4393
Mark A KayDepartment of Pediatrics, Stanford University, Stanford, CA, USA. markay@stanford.edu.ORCID 0000-0002-2799-2615
Stanford University · USDaiichi-Sankyo (Japan) · JPHoward Hughes Medical Institute · USStanford Medicine · US

Funding

Selection of New rAAV Vectors Using Replicating Viral Capsids LibrariesR01AI116698 · NIAID · STANFORD UNIVERSITY · PI Mark A Kay · 2015 to 2026
$8.0M
Nikon A1Rsi resonant spectral confocal microscopeS10OD010580 · OD · STANFORD UNIVERSITY · PI FULLER, MARGARET T · 2013 to 2013
$377k
Regulation and retention of extrachromosomal oncogene amplifications in cancerF99CA274692 · NCI · STANFORD UNIVERSITY · PI HUNG, KING L. · 2022 to 2023
$82k
NCI NIH HHS F99 CA274692NIAID NIH HHS R01 AI116698NIH HHS S10 OD010580
6 · The paper itself

Abstract

Recombinant adeno-associated viral vectors (rAAVs) are among the most commonly used vehicles for in vivo based gene therapies. However, it is hard to predict which AAV capsid will provide the most robust expression in human subjects due to the observed discordance in vector-mediated transduction between species. In our study, we use a primate specific capsid, AAV-LK03, to demonstrate that the limitation of this capsid towards transduction of mouse cells is unrelated to cell entry and nuclear transport but rather due to depleted histone H3 chemical modifications related to active transcription, namely H3K4me3 and H3K27ac, on the vector DNA itself. A single-amino acid insertion into the AAV-LK03 capsid enables efficient transduction and the accumulation of active-related epigenetic marks on the vector chromatin in mouse without compromising transduction efficiency in human cells. Our study suggests that the capsid protein itself is involved in driving the epigenetic status of the vector genome, most likely during the process of uncoating. Programming viral chromatin states by capsid design may enable facile DNA transduction between vector and host species and ultimately lead to rational selection of AAV capsids for use in humans.

Indexed as

CapsidCapsid ProteinsAnimalsChromatinDependovirusEpigenesis, GeneticGenetic VectorsHumansMiceTransduction, GeneticCapsid ProteinsChromatin

Identifiers

PMID37117181
PMCPMC10147666
OpenAlexW4367313524

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.