ArticleBioinformatics advances2023
iEnhancer-ELM: improve enhancer identification by extracting position-related multiscale contextual information based on enhancer language models.
Article in Bioinformatics advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 25 citations in OpenAlex.
- iEnhancer-Flow: Integrating Transformer-Based Sequence Learning with DNA Shape Insights for Robust Enhancer Prediction.Interdisciplinary sciences, computational life sciences · 2026Article
- Genomic language model for predicting enhancers and their allele-specific activity in the human genome.Bioinformatics (Oxford, England) · 2026Article
- Heuristic multi-site optimization for protein sequence design using Masked Protein Language Models.PLoS computational biology · 2026Article
- Discovering the complete enhancer map of human herpesviruses using a natural language processing model.Nature communications · 2025Article
- Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine.FEBS open bio · 2025Review
- DNA sequence analysis landscape: a comprehensive review of DNA sequence analysis task types, databases, datasets, word embedding methods, and language models.Frontiers in medicine · 2025Review
- A review on the applications of Transformer-based language models for nucleotide sequence analysis.Computational and structural biotechnology journal · 2025Review
- Directed evolution of antimicrobial peptides using multi-objective zeroth-order optimization.Briefings in bioinformatics · 2024Article
- CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network.Journal of chemical information and modeling · 2024Article
- A deep learning model for DNA enhancer prediction based on nucleotide position aware feature encoding.iScience · 2024Article
- ADH-Enhancer: an attention-based deep hybrid framework for enhancer identification and strength prediction.Briefings in bioinformatics · 2024Article
- Predmoter-cross-species prediction of plant promoter and enhancer regions.Bioinformatics advances · 2024Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Motivation: Enhancers are important Results: In this article, we propose a novel enhancer identification method (iEnhancer-ELM) based on BERT-like enhancer language models. iEnhancer-ELM tokenizes DNA sequences with multi-scale Availability and implementation: The models and associated code are available at https://github.com/chen-bioinfo/iEnhancer-ELM. Supplementary information: Supplementary data are available at
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.