Evidence map›Paper›PMID 37112921›Full record

ArticleViruses2023

Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012-2020).

Ivailo Alexiev, Anupama Shankar, Yi Pan, Lyubomira Grigorova, Alexandra Partsuneva, Reneta Dimitrova, Anna Gancheva, Asya Kostadinova, Ivaylo Elenkov, Nina Yancheva and 10 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Ivailo AlexievNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.ORCID 0000-0002-3186-1124
Anupama ShankarDivision of HIV Prevention, National Center for HIV, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA.
Yi PanDivision of HIV Prevention, National Center for HIV, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA.
Lyubomira GrigorovaNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.
Alexandra PartsunevaNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.
Reneta DimitrovaNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.ORCID 0000-0001-7711-6798
Anna GanchevaNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.
Asya KostadinovaNational Reference Laboratory of HIV, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.
Ivaylo ElenkovSpecialized Hospital for Active Treatment of Infectious & Parasitic Diseases, 1606 Sofia, Bulgaria.
Nina YanchevaSpecialized Hospital for Active Treatment of Infectious & Parasitic Diseases, 1606 Sofia, Bulgaria.ORCID 0000-0002-0095-263X
Rusina GrozdevaSpecialized Hospital for Active Treatment of Infectious & Parasitic Diseases, 1606 Sofia, Bulgaria.
Dimitar StrashimirovSpecialized Hospital for Active Treatment of Infectious & Parasitic Diseases, 1606 Sofia, Bulgaria.
Mariana StoychevaDepartment of Infectious Diseases, Medical University, 4002 Plovdiv, Bulgaria.
Ivan BaltadzhievDepartment of Infectious Diseases, Medical University, 4002 Plovdiv, Bulgaria.
Tsetsa DoichinovaDepartment of Infectious Diseases, Medical University, 5800 Pleven, Bulgaria.
Lilia PekovaClinic of Infectious Diseases, Medical University, 6000 Stara Zagora, Bulgaria.
Minas KosmidisClinic of Infectious Diseases, Medical University, 9002 Varna, Bulgaria.
Radoslava EmilovaNational Reference Laboratory of Immunology, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.ORCID 0000-0002-0018-1361
Maria NikolovaNational Reference Laboratory of Immunology, National Center of Infectious and Parasitic Diseases (NCIPD), 1504 Sofia, Bulgaria.
William M SwitzerDivision of HIV Prevention, National Center for HIV, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA.ORCID 0000-0003-4591-8731
National Center of Infectious and Parasitic Diseases · BGNational Specialized Hospital for Active Treatment of Hematologic Diseases · BGCenters for Disease Control and Prevention · USMedical University Plovdiv · BGMedical University of Varna · BGMedical University Pleven · BGTrakia University · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transmitted HIV drug resistance in Bulgaria was first reported in 2015 using data from 1988-2011. We determined the prevalence of surveillance drug resistance mutations (SDRMs) and HIV-1 genetic diversity in Bulgaria during 2012-2020 using polymerase sequences from 1053 of 2010 (52.4%) antiretroviral therapy (ART)-naive individuals. Sequences were analyzed for DRM using the WHO HIV SDRM list implemented in the calculated population resistance tool at Stanford University. Genetic diversity was inferred using automated subtyping tools and phylogenetics. Cluster detection and characterization was performed using MicrobeTrace. The overall rate of SDRMs was 5.7% (60/1053), with 2.2% having resistance to nucleoside reverse transcriptase inhibitors (NRTIs), 1.8% to non-nucleoside reverse transcriptase inhibitors (NNRTIs), 2.1% to protease inhibitors (PIs), and 0.4% with dual-class SDRMs. We found high HIV-1 diversity, with the majority being subtype B (60.4%), followed by F1 (6.9%), CRF02_AG (5.2%), A1 (3.7%), CRF12_BF (0.8%), and other subtypes and recombinant forms (23%). Most (34/60, 56.7%) of the SDRMs were present in transmission clusters of different subtypes composed mostly of male-to-male sexual contact (MMSC), including a 14-member cluster of subtype B sequences from 12 MMSC and two males reporting heterosexual contact; 13 had the L90M PI mutation and one had the T215S NRTI SDRM. We found a low SDRM prevalence amid high HIV-1 diversity among ART-naive patients in Bulgaria during 2012-2020. The majority of SDRMs were found in transmission clusters containing MMSC, indicative of onward spread of SDRM in drug-naive individuals. Our study provides valuable information on the transmission dynamics of HIV drug resistance in the context of high genetic diversity in Bulgaria, for the development of enhanced prevention strategies to end the epidemic.

Indexed as

Anti-HIV AgentsHIV-1HIV InfectionsHIV SeropositivityBulgariaDrug Resistance, ViralGenotypeHumansMaleMethionineMutationPhylogenyPrevalenceReverse Transcriptase InhibitorsSulfonium CompoundsAnti-HIV AgentsMethioninemethionylmethylsulfonium chlorideReverse Transcriptase InhibitorsSulfonium CompoundsHIV-1male-to-male sexual contactsubtypestransmission clusterstransmitted drug resistance

Identifiers

PMID37112921
PMCPMC10146724
OpenAlexW4363678412

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.