Evidence map›Paper›PMID 37112895›Full record

ArticleViruses2023

Characterization of a Novel African Swine Fever Virus p72 Genotype II from Nigeria.

Aruna Ambagala, Kalhari Goonewardene, Lindsey Lamboo, Melissa Goolia, Cassidy Erdelyan, Mathew Fisher, Katherine Handel, Oliver Lung, Sandra Blome, Jacqueline King and 10 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  8. African swine fever virus biotype identification tool.Microbiology resource announcements · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 5 countries.

Aruna AmbagalaNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.ORCID 0000-0003-1783-2105
Kalhari GoonewardeneNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.ORCID 0000-0003-1949-7961
Lindsey LambooNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.
Melissa GooliaNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.
Cassidy ErdelyanNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.ORCID 0000-0002-8893-7804
Mathew FisherNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.
Katherine HandelNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.
Oliver LungNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada.
Sandra BlomeInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, 17493 Greifswald, Germany.ORCID 0000-0001-5465-5609
Jacqueline KingInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, 17493 Greifswald, Germany.ORCID 0000-0003-1857-7660
Jan Hendrik ForthInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, 17493 Greifswald, Germany.
Sten CalvelageInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, 17493 Greifswald, Germany.ORCID 0000-0001-8511-9067
Edward SpinardPlum Island Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Greenport, NY 11944, USA.ORCID 0000-0001-7268-6580
Douglas P GladuePlum Island Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Greenport, NY 11944, USA.ORCID 0000-0002-7894-0233
Charles MasembeCollege of Natural Resources (CoNAS), Makerere University, Kampala P.O Box 7062, Uganda.
Adeyinka J AdedejiNational Veterinary Research Institute, Vom 930103, Nigeria.ORCID 0000-0001-5736-6466
Toyin OlubadeNational Veterinary Research Institute, Vom 930103, Nigeria.
Nanven A MauriceNational Veterinary Research Institute, Vom 930103, Nigeria.ORCID 0000-0003-2708-2440
Hussaini G UlaramuNational Veterinary Research Institute, Vom 930103, Nigeria.
Pam D LukaNational Veterinary Research Institute, Vom 930103, Nigeria.ORCID 0000-0002-6170-4242
Canadian Food Inspection Agency · CANational Veterinary Research Institute · NGFriedrich-Loeffler-Institut · DEUnited States Department of Agriculture · USMakerere University · UG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African swine fever (ASF) is a high-consequence transboundary hemorrhagic fever of swine. It continues to spread across the globe causing socio-economic issues and threatening food security and biodiversity. In 2020, Nigeria reported a major ASF outbreak, killing close to half a million pigs. Based on the partial sequences of the genes B646L (p72) and E183L (p54), the virus responsible for the outbreak was identified as an African swine fever virus (ASFV) p72 genotype II. Here, we report further characterization of ASFV RV502, one of the isolates obtained during the outbreak. The whole genome sequence of this virus revealed a deletion of 6535 bp between the nucleotide positions 11,760-18,295 of the genome, and an apparent reverse complement duplication of the 5' end of the genome at the 3' end. Phylogenetically, ASFV RV502 clustered together with ASFV MAL/19/Karonga and ASFV Tanzania/Rukwa/2017/1 suggesting that the virus responsible for the 2020 outbreak in Nigeria has a South-eastern African origin.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDisease OutbreaksGenotypeNigeriaPhylogenySequence Analysis, DNASus scrofaSwineAfrican swine fevergenotype IINigeriaWest Africa

Identifiers

PMID37112895
PMCPMC10146018
OpenAlexW4362586263

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.