Evidence map›Paper›PMID 37112833›Full record

ArticleViruses2023

The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis.

Mikhail Y Salnikov, Eric Wang, Erik Christensen, Martin A Prusinkiewicz, Parisa Shooshtari, Joe S Mymryk

Abstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mikhail Y SalnikovDepartment of Microbiology and Immunology, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0003-2446-2608
Eric WangDepartment of Pathology and Laboratory Medicine, Western University, London, ON N6A 3K7, Canada.
Erik ChristensenDepartment of Computer Science, Western University, London, ON N6A 5B7, Canada.
Martin A PrusinkiewiczDepartment of Microbiology and Immunology, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0001-8310-7855
Parisa ShooshtariDepartment of Pathology and Laboratory Medicine, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0003-2273-1034
Joe S MymrykDepartment of Microbiology and Immunology, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0002-3521-8005

Funding

CIHR PJT-173496
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) causes lifelong infection in over 90% of the world's population. EBV infection leads to several types of B cell and epithelial cancers due to the viral reprogramming of host-cell growth and gene expression. EBV is associated with 10% of stomach/gastric adenocarcinomas (EBVaGCs), which have distinct molecular, pathological, and immunological characteristics compared to EBV-negative gastric adenocarcinomas (EBVnGCs). Publicly available datasets, such as The Cancer Genome Atlas (TCGA), contain comprehensive transcriptomic, genomic, and epigenomic data for thousands of primary human cancer samples, including EBVaGCs. Additionally, single-cell RNA-sequencing data are becoming available for EBVaGCs. These resources provide a unique opportunity to explore the role of EBV in human carcinogenesis, as well as differences between EBVaGCs and their EBVnGC counterparts. We have constructed a suite of web-based tools called the EBV Gastric Cancer Resource (EBV-GCR), which utilizes TCGA and single-cell RNA-seq data and can be used for research related to EBVaGCs. These web-based tools allow investigators to gain in-depth biological and clinical insights by exploring the effects of EBV on cellular gene expression, associations with patient outcomes, immune landscape features, and differential gene methylation, featuring both whole-tissue and single-cell analyses.

Indexed as

AdenocarcinomaEpstein-Barr Virus InfectionsStomach NeoplasmsCarcinogenesisHerpesvirus 4, HumanHumansbioinformaticsepigenetic changesEpstein-Barr virusgastric cancergene expressionimmune landscapemethylationsingle-cell RNA sequencingTCGAtumor immunology

Identifiers

PMID37112833
PMCPMC10145221

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.