Evidence map›Paper›PMID 37110719›Full record

ReviewMolecules (Basel, Switzerland)2023

Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data.

Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng

Open access · goldAbstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. The cyclic nucleotide binding sites of Swiss-Cheese, thebioRxiv : the preprint server for biology · 2025
    Article
  3. Review
  4. LipiDex 2 Integrates MSAnalytical chemistry · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Dylan H RossEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0009-0005-2943-2282
Jian GuoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Aivett BilbaoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0000-0003-2985-8249
Tao HuanDepartment of Chemistry, Faculty of Science, University of British Columbia, Vancouver Campus, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.ORCID 0000-0001-6295-2435
Richard D SmithEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0000-0002-2381-2349
Xueyun ZhengEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0000-0001-9782-4521
Pacific Northwest National Laboratory · USUniversity of British Columbia · CA

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

The unambiguous identification of lipids is a critical component of lipidomics studies and greatly impacts the interpretation and significance of analyses as well as the ultimate biological understandings derived from measurements. The level of structural detail that is available for lipid identifications is largely determined by the analytical platform being used. Mass spectrometry (MS) coupled with liquid chromatography (LC) is the predominant combination of analytical techniques used for lipidomics studies, and these methods can provide fairly detailed lipid identification. More recently, ion mobility spectrometry (IMS) has begun to see greater adoption in lipidomics studies thanks to the additional dimension of separation that it provides and the added structural information that can support lipid identification. At present, relatively few software tools are available for IMS-MS lipidomics data analysis, which reflects the still limited adoption of IMS as well as the limited software support. This fact is even more pronounced for isomer identifications, such as the determination of double bond positions or integration with MS-based imaging. In this review, we survey the landscape of software tools that are available for the analysis of IMS-MS-based lipidomics data and we evaluate lipid identifications produced by these tools using open-access data sourced from the peer-reviewed lipidomics literature.

Indexed as

Ion Mobility SpectrometryLipidomicsLipidsMass SpectrometrySoftwareLipidsion mobility spectrometrylipid identificationlipidomicsmass spectrometrysoftware

Identifiers

PMID37110719
PMCPMC10142755
OpenAlexW4366213778

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.