Evidence map›Paper›PMID 37110644›Full record

ArticleMolecules (Basel, Switzerland)2023

An Expedited Route to Optical and Electronic Properties at Finite Temperature via Unsupervised Learning.

Fulvio Perrella, Federico Coppola, Nadia Rega, Alessio Petrone

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fulvio PerrellaScuola Superiore Meridionale, Largo San Marcellino 10, I-80138 Napoli, Italy.ORCID 0000-0003-3376-5897
Federico CoppolaScuola Superiore Meridionale, Largo San Marcellino 10, I-80138 Napoli, Italy.ORCID 0000-0002-5845-4211
Nadia RegaScuola Superiore Meridionale, Largo San Marcellino 10, I-80138 Napoli, Italy.ORCID 0000-0002-2983-766X
Alessio PetroneScuola Superiore Meridionale, Largo San Marcellino 10, I-80138 Napoli, Italy.ORCID 0000-0003-2232-9934

Funding

Gaussian Inc. NAMinistry of Education, Universities and Research PRIN 2017YJMPZN001, PRIN 202082CE3T_002
6 · The paper itself

Abstract

Electronic properties and absorption spectra are the grounds to investigate molecular electronic states and their interactions with the environment. Modeling and computations are required for the molecular understanding and design strategies of photo-active materials and sensors. However, the interpretation of such properties demands expensive computations and dealing with the interplay of electronic excited states with the conformational freedom of the chromophores in complex matrices (i.e., solvents, biomolecules, crystals) at finite temperature. Computational protocols combining time dependent density functional theory and ab initio molecular dynamics (MD) have become very powerful in this field, although they require still a large number of computations for a detailed reproduction of electronic properties, such as band shapes. Besides the ongoing research in more traditional computational chemistry fields, data analysis and machine learning methods have been increasingly employed as complementary approaches for efficient data exploration, prediction and model development, starting from the data resulting from MD simulations and electronic structure calculations. In this work, dataset reduction capabilities by unsupervised clustering techniques applied to MD trajectories are proposed and tested for the ab initio modeling of electronic absorption spectra of two challenging case studies: a non-covalent charge-transfer dimer and a ruthenium complex in solution at room temperature. The K-medoids clustering technique is applied and is proven to be able to reduce by ∼100 times the total cost of excited state calculations on an MD sampling with no loss in the accuracy and it also provides an easier understanding of the representative structures (medoids) to be analyzed on the molecular scale.

Indexed as

clustering techniquescomputations of optical spectradensity functional theorymachine learningmolecular dynamics

Identifiers

PMID37110644
PMCPMC10144358

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.