Evidence map›Paper›PMID 37108874›Full record

ArticleJournal of fungi (Basel, Switzerland)2023

Genomic Diversity and Phenotypic Variation in Fungal Decomposers Involved in Bioremediation of Persistent Organic Pollutants.

Jiali Yu, Jingru Lai, Brian M Neal, Bert J White, Mark T Banik, Susie Y Dai

Open access · goldAbstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jiali YuSystems and Synthetic Biology Innovation Hub, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0001-6035-7165
Jingru LaiSystems and Synthetic Biology Innovation Hub, Texas A&M University, College Station, TX 77843, USA.
Brian M NealSystems and Synthetic Biology Innovation Hub, Texas A&M University, College Station, TX 77843, USA.
Bert J WhiteSystems and Synthetic Biology Innovation Hub, Texas A&M University, College Station, TX 77843, USA.
Mark T BanikUSDA Forest Service, Northern Research Station, Center for Forest Mycology Research, Madison, WI 53726, USA.
Susie Y DaiSystems and Synthetic Biology Innovation Hub, Texas A&M University, College Station, TX 77843, USA.
Texas A&M University System · USNorthern Research Station · US

Funding

Efficient Bioremediation of Environmentally Persistent Contaminants with Nanomaterial-Fungus Framework (NFF)R01ES032708 · NIEHS · UNIVERSITY OF MISSOURI-COLUMBIA · PI DAI, YUAN, LOWRY, GREGORY VICTOR · 2021 to 2025
$1.5M
NIEHS NIH HHS R01 ES032708
6 · The paper itself

Abstract

Fungi work as decomposers to break down organic carbon, deposit recalcitrant carbon, and transform other elements such as nitrogen. The decomposition of biomass is a key function of wood-decaying basidiomycetes and ascomycetes, which have the potential for the bioremediation of hazardous chemicals present in the environment. Due to their adaptation to different environments, fungal strains have a diverse set of phenotypic traits. This study evaluated 320 basidiomycetes isolates across 74 species for their rate and efficiency of degrading organic dye. We found that dye-decolorization capacity varies among and within species. Among the top rapid dye-decolorizing fungi isolates, we further performed genome-wide gene family analysis and investigated the genomic mechanism for their most capable dye-degradation capacity. Class II peroxidase and DyP-type peroxidase were enriched in the fast-decomposer genomes. Gene families including lignin decomposition genes, reduction-oxidation genes, hydrophobin, and secreted peptidases were expanded in the fast-decomposer species. This work provides new insights into persistent organic pollutant removal by fungal isolates at both phenotypic and genotypic levels.

Indexed as

agaricomycetesbioremediationcomparative genomicsdecolorizationlignin-degrading genes

Identifiers

PMID37108874
PMCPMC10145412
OpenAlexW4361284233

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.