Evidence map›Paper›PMID 37108679›Full record

ArticleInternational journal of molecular sciences2023

Epigenetic Gene-Regulatory Loci in Alu Elements Associated with Autism Susceptibility in the Prefrontal Cortex of ASD.

Thanit Saeliw, Songphon Kanlayaprasit, Surangrat Thongkorn, Kwanjira Songsritaya, Bumpenporn Sanannam, Chanachai Sae-Lee, Depicha Jindatip, Valerie W Hu, Tewarit Sarachana

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 14 citations in OpenAlex.

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  14. Retrotransposons in embryogenesis and neurodevelopment.Biochemical Society transactions · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Thanit SaeliwThe Ph.D. Program in Clinical Biochemistry and Molecular Medicine, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Songphon KanlayaprasitSystems Neuroscience of Autism and Psychiatric Disorders (SYNAPS) Research Unit, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Surangrat ThongkornThe Ph.D. Program in Clinical Biochemistry and Molecular Medicine, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Kwanjira SongsritayaThe M.Sc. Program in Clinical Biochemistry and Molecular Medicine, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Bumpenporn SanannamDivision of Anatomy, Department of Preclinical Science, Faculty of Medicine, Thammasat University, Pathumthani 12120, Thailand.
Chanachai Sae-LeeResearch Division, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand.
Depicha JindatipSystems Neuroscience of Autism and Psychiatric Disorders (SYNAPS) Research Unit, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.ORCID 0000-0001-9825-2692
Valerie W HuDepartment of Biochemistry and Molecular Medicine, School of Medicine and Health Sciences, The George Washington University, Washington, DC 20052, USA.ORCID 0000-0002-3357-0777
Tewarit SarachanaSystems Neuroscience of Autism and Psychiatric Disorders (SYNAPS) Research Unit, Department of Clinical Chemistry, Faculty of Allied Health Sciences, Chulalongkorn University, Bangkok 10330, Thailand.ORCID 0000-0003-4518-9399
Chulalongkorn University · THGeorge Washington University · USSiriraj Hospital · THThammasat University · TH

Funding

National Research Council of Thailand (NRCT) NARatchadapisek Somphot Fund for Supporting Research Unit, Chulalongkorn University GRU 6300437001-1, GRU_64_033_37_004, and GRU 6506537004-1Thailand Science research and Innovation Fund Chulalongkorn University HEA663700091The 90th Anniversary Chulalongkorn University Fund (Ratchadaphiseksomphot Endowment Fund:), Graduate School, Chulalongkorn University GCUGR1125632108D-108The 90th Anniversary Chulalongkorn University Fund Ratchadaphiseksomphot Endowment Fund, Graduate School, Chulalongkorn University GCUGR1125651061D-061the Royal Golden Jubilee Ph.D. Program Scholarship from the Thai-land Research Fund and National Research Council of Thailand PHD/0029/2561The Scholarship from the Graduate School, Chulalongkorn University to commemorate the 72nd anniversary of his Majesty King Bhumibol Aduladej NAthe Second Century Fund (C2F), Chulalongkorn University NA
6 · The paper itself

Abstract

Alu elements are transposable elements that can influence gene regulation through several mechanisms; nevertheless, it remains unclear whether dysregulation of Alu elements contributes to the neuropathology of autism spectrum disorder (ASD). In this study, we characterized transposable element expression profiles and their sequence characteristics in the prefrontal cortex tissues of ASD and unaffected individuals using RNA-sequencing data. Our results showed that most of the differentially expressed transposable elements belong to the Alu family, with 659 loci of Alu elements corresponding to 456 differentially expressed genes in the prefrontal cortex of ASD individuals. We predicted cis- and trans-regulation of Alu elements to host/distant genes by conducting correlation analyses. The expression level of Alu elements correlated significantly with 133 host genes (cis-regulation, adjusted

Indexed as

Autism Spectrum DisorderAutistic DisorderAlu ElementsDNA MethylationDNA Transposable ElementsEpigenesis, GeneticHumansPrefrontal CortexDNA Transposable ElementsAlu elementsautism spectrum disorderDNA methylationepigenetic mechanismretrotransposonstransposable elements

Identifiers

PMID37108679
PMCPMC10139202
OpenAlexW4366599198

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.