Evidence map›Paper›PMID 37108203›Full record

ArticleInternational journal of molecular sciences2023

Analysis of Ku70 S155 Phospho-Specific BioID2 Interactome Identifies Ku Association with TRIP12 in Response to DNA Damage.

Sanna Abbasi, Laila Bayat, Caroline Schild-Poulter

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sanna AbbasiDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON N6A 3K7, Canada.
Laila BayatDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON N6A 3K7, Canada.
Caroline Schild-PoulterDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0001-9943-9942
Western University · CA

Funding

Natural Sciences and Engineering Research Council Discovery grant [2018-05518] and Discovery Accelerator Supplement [2018-522665]
6 · The paper itself

Abstract

The Ku heterodimer, composed of subunits Ku70 and Ku80, is known for its essential role in repairing double-stranded DNA breaks via non-homologous end joining (NHEJ). We previously identified Ku70 S155 as a novel phosphorylation site within the von Willebrand A-like (vWA) domain of Ku70 and documented an altered DNA damage response in cells expressing a Ku70 S155D phosphomimetic mutant. Here, we conducted proximity-dependent biotin identification (BioID2) screening using wild-type Ku70, Ku70 S155D mutant, and Ku70 with a phosphoablative substitution (S155A) to identify Ku70 S155D-specific candidate proteins that may rely on this phosphorylation event. Using the BioID2 screen with multiple filtering approaches, we compared the protein interactor candidate lists for Ku70 S155D and S155A. TRIP12 was exclusive to the Ku70 S155D list, considered a high confidence interactor based on SAINTexpress analysis, and appeared in all three biological replicates of the Ku70 S155D-BioID2 mass spectrometry results. Using proximity ligation assays (PLA), we demonstrated a significantly increased association between Ku70 S155D-HA and TRIP12 compared to wild-type Ku70-HA cells. In addition, we were able to demonstrate a robust PLA signal between endogenous Ku70 and TRIP12 in the presence of double-stranded DNA breaks. Finally, co-immunoprecipitation analyses showed an enhanced interaction between TRIP12 and Ku70 upon treatment with ionizing radiation, suggesting a direct or indirect association in response to DNA damage. Altogether, these results suggest an association between Ku70 phospho-S155 and TRIP12.

Indexed as

DNA-Binding ProteinsKu AutoantigenUbiquitin-Protein LigasesAntigens, NuclearBiotinCarrier ProteinsCell LineDNA DamageDNA End-Joining RepairDNA RepairHumansAntigens, NuclearBiotinCarrier ProteinsDNA-Binding ProteinsKu AutoantigenTRIP12 protein, humanUbiquitin-Protein Ligasesdouble-stranded breaksKu70phosphorylationproximity-dependent biotin identification (BioID2)proximity ligation assayTRIP12

Identifiers

PMID37108203
PMCPMC10138931
OpenAlexW4364378205

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.