Evidence map›Paper›PMID 37108080›Full record

ArticleInternational journal of molecular sciences2023

Overexpression of Pericentromeric HSAT2 DNA Increases Expression of EMT Markers in Human Epithelial Cancer Cell Lines.

Nikita Ponomartsev, Danil Zilov, Ekaterina Gushcha, Alexandra Travina, Alexander Sergeev, Natella Enukashvily

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nikita PonomartsevInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.
Danil ZilovInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.
Ekaterina GushchaInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.
Alexandra TravinaInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.
Alexander SergeevInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.
Natella EnukashvilyInstitute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.ORCID 0000-0002-5971-7917

Funding

Ministry of Science and Higher Education of the Russian Federation project 15.BRC.21.0011, Agreement No. 075-15-2021-1075
6 · The paper itself

Abstract

Pericentromeric tandemly repeated DNA of human satellites 1, 2, and 3 (HS1, HS2, and HS3) is actively transcribed in some cells. However, the functionality of the transcription remains obscure. Studies in this area have been hampered by the absence of a gapless genome assembly. The aim of our study was to map a transcript that we have previously described as HS2/HS3 on chromosomes using a newly published gapless genome assembly T2T-CHM13, and create a plasmid overexpressing the transcript to assess the influence of HS2/HS3 transcription on cancer cells. We report here that the sequence of the transcript is tandemly repeated on nine chromosomes (1, 2, 7, 9, 10, 16, 17, 22, and Y). A detailed analysis of its genomic localization and annotation in the T2T-CHM13 assembly revealed that the sequence belonged to HSAT2 (HS2) but not to the HS3 family of tandemly repeated DNA. The transcript was found on both strands of HSAT2 arrays. The overexpression of the HSAT2 transcript increased the transcription of the genes encoding the proteins involved in the epithelial-to-mesenchymal transition, EMT (

Indexed as

DNANeoplasmsCell LineCell Line, TumorEpithelial-Mesenchymal TransitionGene Expression Regulation, NeoplasticHumansTransfectionDNACHM13 assemblyhuman satellite 3 transcriptionlong noncoding RNApericentromeresatellite DNA

Identifiers

PMID37108080
PMCPMC10138405

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.